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2011 | OriginalPaper | Buchkapitel

1. Introduction

verfasst von : Ina Koch, Falk Schreiber

Erschienen in: Modeling in Systems Biology

Verlag: Springer London

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Abstract

This chapter gives a general introduction into the field of systems biology and the motivation for using Petri nets in this field. We consider modeling processes in the context of biological modeling approaches providing different examples. Starting from a general description of the purpose of a model and the modeling process, we cover the range from qualitative to quantitative modeling. We compile different modeling techniques at different abstraction levels, for example, at discrete, stochastic, and continuous levels. In this context, we introduce Petri nets and give the motivation for using Petri nets in particular for modeling biochemical systems. We describe the first applications of Petri nets in biology and give a brief overview of the progress made so far. Furthermore, we discuss the main public data resources for systems biology, giving an overview of microarray data repositories, protein–protein interaction databases, and pathway databases. Finally, we describe methods and tools for the visualization of biochemical systems and Petri net models.

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Metadaten
Titel
Introduction
verfasst von
Ina Koch
Falk Schreiber
Copyright-Jahr
2011
Verlag
Springer London
Buch
Modeling in Systems Biology

Print ISBN: 978-1-84996-473-9

Electronic ISBN: 978-1-84996-474-6

Copyright-Jahr: 2011

DOI
https://doi.org/10.1007/978-1-84996-474-6_1