Skip to main content

2017 | Supplement | Buchkapitel

Optimal Transport for Diffeomorphic Registration

verfasst von : Jean Feydy, Benjamin Charlier, François-Xavier Vialard, Gabriel Peyré

Erschienen in: Medical Image Computing and Computer Assisted Intervention − MICCAI 2017

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

This paper introduces the use of unbalanced optimal transport methods as a similarity measure for diffeomorphic matching of imaging data. The similarity measure is a key object in diffeomorphic registration methods that, together with the regularization on the deformation, defines the optimal deformation. Most often, these similarity measures are local or non local but simple enough to be computationally fast. We build on recent theoretical and numerical advances in optimal transport to propose fast and global similarity measures that can be used on surfaces or volumetric imaging data. This new similarity measure is computed using a fast generalized Sinkhorn algorithm. We apply this new metric in the LDDMM framework on synthetic and real data, fibres bundles and surfaces and show that better matching results are obtained.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Anhänge
Nur mit Berechtigung zugänglich
Literatur
1.
Zurück zum Zitat Al-Rfou, R., Alain, G., Almahairi, A., Angermüller, C., Bahdanau, D., Ballas, N., Zhang, Y., et al.: Theano: A python framework for fast computation of mathematical expressions. CoRR abs/1605.02688 (2016) Al-Rfou, R., Alain, G., Almahairi, A., Angermüller, C., Bahdanau, D., Ballas, N., Zhang, Y., et al.: Theano: A python framework for fast computation of mathematical expressions. CoRR abs/1605.02688 (2016)
2.
Zurück zum Zitat Avants, B., Epstein, C., Grossman, M., Gee, J.: Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Med. Image Anal. 12(1), 26–41 (2008)CrossRef Avants, B., Epstein, C., Grossman, M., Gee, J.: Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Med. Image Anal. 12(1), 26–41 (2008)CrossRef
3.
Zurück zum Zitat Charon, N., Trouvé, A.: The varifold representation of nonoriented shapes for diffeomorphic registration. SIAM J. Imaging Sci. 6(4), 2547–2580 (2013)MathSciNetCrossRef Charon, N., Trouvé, A.: The varifold representation of nonoriented shapes for diffeomorphic registration. SIAM J. Imaging Sci. 6(4), 2547–2580 (2013)MathSciNetCrossRef
4.
Zurück zum Zitat Chizat, L., Peyré, G., Schmitzer, B., Vialard, F.X.: Scaling algorithms for unbalanced transport problems. arXiv preprint arXiv:1607.05816 (2016) Chizat, L., Peyré, G., Schmitzer, B., Vialard, F.X.: Scaling algorithms for unbalanced transport problems. arXiv preprint arXiv:​1607.​05816 (2016)
6.
Zurück zum Zitat Cuturi, M.: Sinkhorn distances: lightspeed computation of optimal transportation. Proc. NIPS 26, 2292–2300 (2013) Cuturi, M.: Sinkhorn distances: lightspeed computation of optimal transportation. Proc. NIPS 26, 2292–2300 (2013)
7.
Zurück zum Zitat Cuturi, M., Doucet, A.: Fast computation of Wasserstein barycenters. In: Proceedings of the 31st International Conference on Machine Learning (ICML), JMLR W&CP, vol. 32 (2014) Cuturi, M., Doucet, A.: Fast computation of Wasserstein barycenters. In: Proceedings of the 31st International Conference on Machine Learning (ICML), JMLR W&CP, vol. 32 (2014)
8.
Zurück zum Zitat Gee, J.C., Reivich, M., Bajcsy, R.: Elastically deforming a three-dimensional atlas to match anatomical brain images. J. Comput. Assist. Tomogr. 17, 225–236 (1993)CrossRef Gee, J.C., Reivich, M., Bajcsy, R.: Elastically deforming a three-dimensional atlas to match anatomical brain images. J. Comput. Assist. Tomogr. 17, 225–236 (1993)CrossRef
9.
Zurück zum Zitat Gori, P., et al.: A prototype representation to approximate white matter bundles with weighted currents. In: Golland, P., Hata, N., Barillot, C., Hornegger, J., Howe, R. (eds.) MICCAI 2014. LNCS, vol. 8675, pp. 289–296. Springer, Cham (2014). doi:10.1007/978-3-319-10443-0_37CrossRef Gori, P., et al.: A prototype representation to approximate white matter bundles with weighted currents. In: Golland, P., Hata, N., Barillot, C., Hornegger, J., Howe, R. (eds.) MICCAI 2014. LNCS, vol. 8675, pp. 289–296. Springer, Cham (2014). doi:10.​1007/​978-3-319-10443-0_​37CrossRef
10.
Zurück zum Zitat Liero, M., Mielke, A., Savaré, G.: Optimal entropy-transport problems and a new Hellinger-Kantorovich distance between positive measures. arXiv e-prints (2015) Liero, M., Mielke, A., Savaré, G.: Optimal entropy-transport problems and a new Hellinger-Kantorovich distance between positive measures. arXiv e-prints (2015)
11.
Zurück zum Zitat Montavon, G., Müller, K.R., Cuturi, M.: Wasserstein training of restricted Boltzmann machines. In: Advance in Neural Information Processing Systems (2016) Montavon, G., Müller, K.R., Cuturi, M.: Wasserstein training of restricted Boltzmann machines. In: Advance in Neural Information Processing Systems (2016)
12.
Zurück zum Zitat Santambrogio, F.: Optimal transport for applied mathematicians. Progress in Nonlinear Differential Equations and Their Applications, vol. 87. Springer, Cham (2015)CrossRef Santambrogio, F.: Optimal transport for applied mathematicians. Progress in Nonlinear Differential Equations and Their Applications, vol. 87. Springer, Cham (2015)CrossRef
13.
Zurück zum Zitat Sejdinovic, D., Sriperumbudur, B., Gretton, A., Fukumizu, K.: Equivalence of distance-based and RKHS-based statistics in hypothesis testing. Ann. Statist. 41(5), 2263–2291 (2013)MathSciNetCrossRef Sejdinovic, D., Sriperumbudur, B., Gretton, A., Fukumizu, K.: Equivalence of distance-based and RKHS-based statistics in hypothesis testing. Ann. Statist. 41(5), 2263–2291 (2013)MathSciNetCrossRef
14.
Zurück zum Zitat Sotiras, A., Davatzikos, C., Paragios, N.: Deformable medical image registration: a survey. IEEE Trans. Med. Imaging 32(7), 1153–1190 (2013)CrossRef Sotiras, A., Davatzikos, C., Paragios, N.: Deformable medical image registration: a survey. IEEE Trans. Med. Imaging 32(7), 1153–1190 (2013)CrossRef
15.
Zurück zum Zitat Vaillant, M., Glaunès, J.: Surface matching via currents. In: Christensen, G.E., Sonka, M. (eds.) IPMI 2005. LNCS, vol. 3565, pp. 381–392. Springer, Heidelberg (2005). doi:10.1007/11505730_32CrossRef Vaillant, M., Glaunès, J.: Surface matching via currents. In: Christensen, G.E., Sonka, M. (eds.) IPMI 2005. LNCS, vol. 3565, pp. 381–392. Springer, Heidelberg (2005). doi:10.​1007/​11505730_​32CrossRef
Metadaten
Titel
Optimal Transport for Diffeomorphic Registration
verfasst von
Jean Feydy
Benjamin Charlier
François-Xavier Vialard
Gabriel Peyré
Copyright-Jahr
2017
DOI
https://doi.org/10.1007/978-3-319-66182-7_34