Skip to main content

2018 | OriginalPaper | Buchkapitel

Medical Knowledge Attention Enhanced Neural Model for Named Entity Recognition in Chinese EMR

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Named entity recognition (NER) in Chinese electronic medical records (EMRs) has become an important task of clinical natural language processing (NLP). However, limited studies have been performed on the clinical NER study in Chinese EMRs. Furthermore, when end-to-end neural network models have improved clinical NER performance, medical knowledge dictionaries such as various disease association dictionaries, which provide rich information of medical entities and relations among them, are rarely utilized in NER model. In this study, we investigate the problem of NER in Chinese EMRs and propose a clinical neural network NER model enhanced with medical knowledge attention by combining the entity mention information contained in external medical knowledge bases with EMR context together. Experimental results on the manually labeled dataset demonstrated that the proposed method can achieve better performance than the previous methods in most cases.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
Zurück zum Zitat Cao, Y.-G., Liu, F., Simpson, P., Antieau, L., Bennett, A.: AskHERMES: an online question answering system for complex clinical questions. J. Biomed. Inform. 44(2), 277–288 (2011)CrossRef Cao, Y.-G., Liu, F., Simpson, P., Antieau, L., Bennett, A.: AskHERMES: an online question answering system for complex clinical questions. J. Biomed. Inform. 44(2), 277–288 (2011)CrossRef
Zurück zum Zitat Carlson, A., Betteridge, J., Wang, R.C., et al.: Coupled semi-supervised learning for information extraction. DBLP, pp. 101–110 (2010) Carlson, A., Betteridge, J., Wang, R.C., et al.: Coupled semi-supervised learning for information extraction. DBLP, pp. 101–110 (2010)
Zurück zum Zitat Chang, F.-X., Guo, J., Xu, W.-R., Chung, S.-R.: Application of word embeddings in biomedical named entity recognition tasks. J. Digit. Inf. Manag. 13(5), 321–327 (2015) Chang, F.-X., Guo, J., Xu, W.-R., Chung, S.-R.: Application of word embeddings in biomedical named entity recognition tasks. J. Digit. Inf. Manag. 13(5), 321–327 (2015)
Zurück zum Zitat Dong, X., Chowdhury, S., Qian, L., et al.: Transfer bi-directional LSTM RNN for named entity recognition in Chinese electronic medical records. In: The Proceedings of International Conference on E-Health Networking, Applications and Services, pp. 1–4. IEEE (2017) Dong, X., Chowdhury, S., Qian, L., et al.: Transfer bi-directional LSTM RNN for named entity recognition in Chinese electronic medical records. In: The Proceedings of International Conference on E-Health Networking, Applications and Services, pp. 1–4. IEEE (2017)
Zurück zum Zitat Lei, J., Tang, B., Lu, X., Gao, K., Jiang, M., Xu, H.: A comprehensive study of named entity recognition in Chinese clinical text. J. Am. Med. Inform. Assoc. 21(5), 808–814 (2014)CrossRef Lei, J., Tang, B., Lu, X., Gao, K., Jiang, M., Xu, H.: A comprehensive study of named entity recognition in Chinese clinical text. J. Am. Med. Inform. Assoc. 21(5), 808–814 (2014)CrossRef
Zurück zum Zitat Li, L., Jin, L., Jiang, Y., Huang, D.: Recognizing biomedical named entities based on the sentence vector/twin word embeddings conditioned bidirectional LSTM. In: Sun, M., Huang, X., Lin, H., Liu, Z., Liu, Y. (eds.) CCL/NLP-NABD-2016. LNCS (LNAI), vol. 10035, pp. 165–176. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-47674-2_15CrossRef Li, L., Jin, L., Jiang, Y., Huang, D.: Recognizing biomedical named entities based on the sentence vector/twin word embeddings conditioned bidirectional LSTM. In: Sun, M., Huang, X., Lin, H., Liu, Z., Liu, Y. (eds.) CCL/NLP-NABD-2016. LNCS (LNAI), vol. 10035, pp. 165–176. Springer, Cham (2016). https://​doi.​org/​10.​1007/​978-3-319-47674-2_​15CrossRef
Zurück zum Zitat Liu, Y., Liu, K., Xu, L.-H. Zhao, J.: Exploring fine-grained entity type constraints for distantly supervised relation extraction. In: Proceedings of COLING 2014, Dublin, Ireland, 23–29 August (2014) Liu, Y., Liu, K., Xu, L.-H. Zhao, J.: Exploring fine-grained entity type constraints for distantly supervised relation extraction. In: Proceedings of COLING 2014, Dublin, Ireland, 23–29 August (2014)
Zurück zum Zitat Liu, Z., Tang, B., Wang, X., et al.: De-identification of clinical notes via recurrent neural network and conditional random field. J. Biomed. Inform. 75S, S34 (2017)CrossRef Liu, Z., Tang, B., Wang, X., et al.: De-identification of clinical notes via recurrent neural network and conditional random field. J. Biomed. Inform. 75S, S34 (2017)CrossRef
Zurück zum Zitat Nadeau, D., Sekine, S.: A survey of named entity recognition and classification. Lingvisticae Investig. 30(1), 3–26 (2007)CrossRef Nadeau, D., Sekine, S.: A survey of named entity recognition and classification. Lingvisticae Investig. 30(1), 3–26 (2007)CrossRef
Zurück zum Zitat Wang, S., Li, S., Chen, T.: Recognition of Chinese medicine named entity based on condition random field. J Xiamen Univ. (Nat. Sci.) 48, 349–364 (2009) Wang, S., Li, S., Chen, T.: Recognition of Chinese medicine named entity based on condition random field. J Xiamen Univ. (Nat. Sci.) 48, 349–364 (2009)
Zurück zum Zitat Wang, Y., Liu, Y., Yu, Z., et al.: A preliminary work on symptom name recognition from free-text clinical records of traditional Chinese medicine using conditional random fields and reasonable features. In: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, Stroudsburg, PA, USA, pp. 223–30 (2012) Wang, Y., Liu, Y., Yu, Z., et al.: A preliminary work on symptom name recognition from free-text clinical records of traditional Chinese medicine using conditional random fields and reasonable features. In: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, Stroudsburg, PA, USA, pp. 223–30 (2012)
Zurück zum Zitat Xu, Y., Wang, Y., Liu, T., et al.: Joint segmentation and named entity recognition using dual decomposition in Chinese discharge summaries. J. Am. Med. Inform. Assoc. 21, e84–e92 (2014)CrossRef Xu, Y., Wang, Y., Liu, T., et al.: Joint segmentation and named entity recognition using dual decomposition in Chinese discharge summaries. J. Am. Med. Inform. Assoc. 21, e84–e92 (2014)CrossRef
Zurück zum Zitat Yao, L., Liu, H., Liu, Y., et al.: Biomedical named entity recognition based on deep neutral network. Int. J. Hybrid Inf. Technol. 8, 279–288 (2015)CrossRef Yao, L., Liu, H., Liu, Y., et al.: Biomedical named entity recognition based on deep neutral network. Int. J. Hybrid Inf. Technol. 8, 279–288 (2015)CrossRef
Zurück zum Zitat Ye, F., Chen, Y.Y., Zhou, G.G., et al.: Intelligent recognition of named entity in electronic medical records. Chin. J. Biomed. Eng. 30(2), 256–262 (2011) Ye, F., Chen, Y.Y., Zhou, G.G., et al.: Intelligent recognition of named entity in electronic medical records. Chin. J. Biomed. Eng. 30(2), 256–262 (2011)
Metadaten
Titel
Medical Knowledge Attention Enhanced Neural Model for Named Entity Recognition in Chinese EMR
verfasst von
Zhichang Zhang
Yu Zhang
Tong Zhou
Copyright-Jahr
2018
DOI
https://doi.org/10.1007/978-3-030-01716-3_31