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2015 | OriginalPaper | Buchkapitel

Pattern-Based Linear Unmixing for Efficient and Reliable Analysis of Multicomponent TCSPC Data

verfasst von : Ingo Gregor, Matthias Patting

Erschienen in: Advanced Photon Counting

Verlag: Springer International Publishing

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Abstract

A method for a reliable quantitative analysis of fluorescence lifetime imaging microscopy (FLIM) data is presented. It is based on the linear unmixing of the intensity decay on the basis of selected reference patterns. This approach allows to use decays that are not mono-exponential without increasing the complexity of the analysis. This is a major benefit when working with labeled biomolecules or using autofluorescent cellular chromophores.
The method can be used intuitively and is fast. Furthermore, based on the reference patterns and the amount of recorded photons, one can easily determine confidence levels of the obtained results. We demonstrate that for a decomposition to three patterns of common chromophores, one achieves a standard deviation of better than 10% for as few as 1,000 photons per pixel, where the total amplitude of such a signal will show an error of 3% due to shot noise. Indeed, the accuracy of the results is very close to a maximum-likelihood estimator that defines the absolute limit for this kind of problem.

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Literatur
1.
Zurück zum Zitat Harvey CD, Yasuda R, Zhong H, Svoboda K (2008) The spread of Ras activity triggered by activation of a single dendritic spine. Science 321(5885):136–140CrossRef Harvey CD, Yasuda R, Zhong H, Svoboda K (2008) The spread of Ras activity triggered by activation of a single dendritic spine. Science 321(5885):136–140CrossRef
2.
Zurück zum Zitat Verveer PJ, Wouters FS, Reynolds AR, Bastiaens PIH (2000) Quantitative imaging of lateral ErbB1 receptor signal propagation in the plasma membrane. Science 290:1567–1570CrossRef Verveer PJ, Wouters FS, Reynolds AR, Bastiaens PIH (2000) Quantitative imaging of lateral ErbB1 receptor signal propagation in the plasma membrane. Science 290:1567–1570CrossRef
3.
Zurück zum Zitat Wouters FS, Bastiaens PIH (1999) Fluorescence lifetime imaging of receptor tyrosine kinase activity in cells. Curr Biol 9(19):1127–1130CrossRef Wouters FS, Bastiaens PIH (1999) Fluorescence lifetime imaging of receptor tyrosine kinase activity in cells. Curr Biol 9(19):1127–1130CrossRef
4.
Zurück zum Zitat Yasuda R (2006) Imaging spatiotemporal dynamics of neuronal signaling using fluorescence resonance energy transfer and fluorescence lifetime imaging microscopy. Curr Opin Neurobiol 16(5):551–561CrossRef Yasuda R (2006) Imaging spatiotemporal dynamics of neuronal signaling using fluorescence resonance energy transfer and fluorescence lifetime imaging microscopy. Curr Opin Neurobiol 16(5):551–561CrossRef
5.
Zurück zum Zitat Clayton AHA, Hanley QS, Verveer PJ (2004) Graphical representation and multicomponent analysis of single-frequency fluorescence lifetime imaging microscopy data. J Microsc 213(1):1–5CrossRef Clayton AHA, Hanley QS, Verveer PJ (2004) Graphical representation and multicomponent analysis of single-frequency fluorescence lifetime imaging microscopy data. J Microsc 213(1):1–5CrossRef
6.
Zurück zum Zitat Digman MA, Caiolfa VR, Zamai M, Gratton E (2008) The phasor approach to fluorescence lifetime imaging analysis. Biophys J 94(2):L14–L16CrossRef Digman MA, Caiolfa VR, Zamai M, Gratton E (2008) The phasor approach to fluorescence lifetime imaging analysis. Biophys J 94(2):L14–L16CrossRef
7.
Zurück zum Zitat Redford GI, Clegg RM (2005) Polar plot representation for frequency-domain analysis of fluorescence lifetimes. J Fluoresc 15(5):805–815CrossRef Redford GI, Clegg RM (2005) Polar plot representation for frequency-domain analysis of fluorescence lifetimes. J Fluoresc 15(5):805–815CrossRef
8.
Zurück zum Zitat Lakowicz JR (2006) Principles of fluorescence spectroscopy, 3rd edn. Springer, New YorkCrossRef Lakowicz JR (2006) Principles of fluorescence spectroscopy, 3rd edn. Springer, New YorkCrossRef
9.
Zurück zum Zitat Walther KA, Papke B, Sinn MB, Michel K, Kinkhabwala A (2011) Precise measurement of protein interacting fractions with fluorescence lifetime imaging microscopy. Mol Biosyst 7(2):322–336CrossRef Walther KA, Papke B, Sinn MB, Michel K, Kinkhabwala A (2011) Precise measurement of protein interacting fractions with fluorescence lifetime imaging microscopy. Mol Biosyst 7(2):322–336CrossRef
10.
Zurück zum Zitat Kullback S, Leibler RA (1951) On information and sufficiency. Ann Math Stat 22(1):79–86CrossRef Kullback S, Leibler RA (1951) On information and sufficiency. Ann Math Stat 22(1):79–86CrossRef
11.
Zurück zum Zitat Lee DD, Seung HS (2000) Algorithms for non-negative matrix factorization. In: Leen TK, Dietterich TG, Tresp V (eds) Advances in neuronal image processing systems 13. MIT, Cambridge, pp 556–562 Lee DD, Seung HS (2000) Algorithms for non-negative matrix factorization. In: Leen TK, Dietterich TG, Tresp V (eds) Advances in neuronal image processing systems 13. MIT, Cambridge, pp 556–562
12.
Zurück zum Zitat Neher RA, Neher E (2004) Applying spectral fingerprinting to the analysis of FRET images. Microsc Res Tech 64(2):185–195CrossRef Neher RA, Neher E (2004) Applying spectral fingerprinting to the analysis of FRET images. Microsc Res Tech 64(2):185–195CrossRef
13.
Zurück zum Zitat Neher RA, Neher E (2004) Optimizing imaging parameters for the separation of multiple labels in a fluorescence image. J Microsc 213:46–62CrossRef Neher RA, Neher E (2004) Optimizing imaging parameters for the separation of multiple labels in a fluorescence image. J Microsc 213:46–62CrossRef
14.
Zurück zum Zitat Enderlein J, Sauer M (2001) Optimal algorithm for single-molecule identification with time-correlated single-photon counting. J Phys Chem A 105(1):48–53CrossRef Enderlein J, Sauer M (2001) Optimal algorithm for single-molecule identification with time-correlated single-photon counting. J Phys Chem A 105(1):48–53CrossRef
15.
Zurück zum Zitat Lawson CL, Hanson RJ (1974) Solving least squares problems. Prentice Hall, Englewood Cliffs Lawson CL, Hanson RJ (1974) Solving least squares problems. Prentice Hall, Englewood Cliffs
16.
Zurück zum Zitat Isenberg I, Dyson RD (1969) The analysis of fluorescence decay by a method of moments. Biophys J 9:1337–1350CrossRef Isenberg I, Dyson RD (1969) The analysis of fluorescence decay by a method of moments. Biophys J 9:1337–1350CrossRef
Metadaten
Titel
Pattern-Based Linear Unmixing for Efficient and Reliable Analysis of Multicomponent TCSPC Data
verfasst von
Ingo Gregor
Matthias Patting
Copyright-Jahr
2015
DOI
https://doi.org/10.1007/4243_2014_70

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