Skip to main content

2016 | OriginalPaper | Buchkapitel

Predictive Subnetwork Extraction with Structural Priors for Infant Connectomes

verfasst von : Colin J. Brown, Steven P. Miller, Brian G. Booth, Jill G. Zwicker, Ruth E. Grunau, Anne R. Synnes, Vann Chau, Ghassan Hamarneh

Erschienen in: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2016

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

We present a new method to identify anatomical subnetworks of the human white matter connectome that are predictive of neurodevelopmental outcomes. We employ our method on a dataset of 168 preterm infant connectomes, generated from diffusion tensor images (DTI) taken shortly after birth, to discover subnetworks that predict scores of cognitive and motor development at 18 months. Predictive subnetworks are extracted via sparse linear regression with weights on each connectome edge. By enforcing novel backbone network and connectivity based priors, along with a non-negativity constraint, the learned subnetworks are simultaneously anatomically plausible, well connected, positively weighted and reasonably sparse. Compared to other state-of-the-art subnetwork extraction methods, we found that our approach extracts subnetworks that are more integrated, have fewer noisy edges and that are also better predictive of neurodevelopmental outcomes.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
2.
Zurück zum Zitat Back, S.A., Miller, S.P.: Brain injury in premature neonates: a primary cerebral dysmaturation disorder? Ann. Neurol. 75(4), 469–486 (2014)CrossRef Back, S.A., Miller, S.P.: Brain injury in premature neonates: a primary cerebral dysmaturation disorder? Ann. Neurol. 75(4), 469–486 (2014)CrossRef
3.
Zurück zum Zitat Chau, V., Synnes, A., Grunau, R.E., Poskitt, K.J., Brant, R., Miller, S.P.: Abnormal brain maturation in preterm neonates associated with adverse developmental outcomes. Neurology 81(24), 2082–2089 (2013)CrossRef Chau, V., Synnes, A., Grunau, R.E., Poskitt, K.J., Brant, R., Miller, S.P.: Abnormal brain maturation in preterm neonates associated with adverse developmental outcomes. Neurology 81(24), 2082–2089 (2013)CrossRef
4.
Zurück zum Zitat Ziv, E., Tymofiyeva, O., Ferriero, D.M., Barkovich, A.J., Hess, C.P., Xu, D.: A machine learning approach to automated structural network analysis: application to neonatal encephalopathy. PLoS ONE 8(11), e78824 (2013)CrossRef Ziv, E., Tymofiyeva, O., Ferriero, D.M., Barkovich, A.J., Hess, C.P., Xu, D.: A machine learning approach to automated structural network analysis: application to neonatal encephalopathy. PLoS ONE 8(11), e78824 (2013)CrossRef
5.
Zurück zum Zitat Brown, C.J., Miller, S.P., Booth, B.G., Andrews, S., Chau, V., Poskitt, K.J., Hamarneh, G.: Structural network analysis of brain development in young preterm neonates. NeuroImage 101, 667–680 (2014)CrossRef Brown, C.J., Miller, S.P., Booth, B.G., Andrews, S., Chau, V., Poskitt, K.J., Hamarneh, G.: Structural network analysis of brain development in young preterm neonates. NeuroImage 101, 667–680 (2014)CrossRef
6.
Zurück zum Zitat Brown, C.J., et al.: Prediction of motor function in very preterm infants using connectome features and LSI. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9349, pp. 69–76. Springer, Heidelberg (2015) Brown, C.J., et al.: Prediction of motor function in very preterm infants using connectome features and LSI. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9349, pp. 69–76. Springer, Heidelberg (2015)
7.
Zurück zum Zitat Munsell, B.C., Wee, C.-Y., Keller, S.S., Weber, B., Elger, C., da Silva, L.A.T., Nesland, T., Styner, M., Shen, D., Bonilha, L.: Evaluation of machine learning algorithms for treatment outcome prediction in patients with epilepsy based on structural connectome data. NeuroImage 118, 219–230 (2015)CrossRef Munsell, B.C., Wee, C.-Y., Keller, S.S., Weber, B., Elger, C., da Silva, L.A.T., Nesland, T., Styner, M., Shen, D., Bonilha, L.: Evaluation of machine learning algorithms for treatment outcome prediction in patients with epilepsy based on structural connectome data. NeuroImage 118, 219–230 (2015)CrossRef
8.
Zurück zum Zitat Zhu, D., Shen, D., Jiang, X., Liu, T.: Connectomics signature for characterizaton of MCI and schizophrenia. In: ISBI, pp. 325–328. IEEE (2014) Zhu, D., Shen, D., Jiang, X., Liu, T.: Connectomics signature for characterizaton of MCI and schizophrenia. In: ISBI, pp. 325–328. IEEE (2014)
9.
Zurück zum Zitat Ghanbari, Y., Smith, A.R., Schultz, R.T., Verma, R.: Identifying group discriminative and age regressive sub-nets from DTI-based connectivity via a unified framework of NMF and graph embedding. MIA 18(8), 1337–1348 (2014) Ghanbari, Y., Smith, A.R., Schultz, R.T., Verma, R.: Identifying group discriminative and age regressive sub-nets from DTI-based connectivity via a unified framework of NMF and graph embedding. MIA 18(8), 1337–1348 (2014)
10.
Zurück zum Zitat Li, H., Xue, Z., Ellmore, T.M., Frye, R.E., Wong, S.T.: Identification of faulty DTI-based sub-networks in autism using network regularized SVM. In: Proceedings of ISBI, vol. 6, pp. 550–553 (2012) Li, H., Xue, Z., Ellmore, T.M., Frye, R.E., Wong, S.T.: Identification of faulty DTI-based sub-networks in autism using network regularized SVM. In: Proceedings of ISBI, vol. 6, pp. 550–553 (2012)
11.
Zurück zum Zitat Grosenick, L., Klingenberg, B., Katovich, K., Knutson, B., Taylor, J.E.: Interpretable whole-brain prediction analysis with GraphNet. NeuroImage 72(2), 304–321 (2013)CrossRef Grosenick, L., Klingenberg, B., Katovich, K., Knutson, B., Taylor, J.E.: Interpretable whole-brain prediction analysis with GraphNet. NeuroImage 72(2), 304–321 (2013)CrossRef
12.
Zurück zum Zitat Bayley, N.: Manual for the Bayley Scales of Infant Development, 3rd edn. Harcourt, San Antonio (2006) Bayley, N.: Manual for the Bayley Scales of Infant Development, 3rd edn. Harcourt, San Antonio (2006)
13.
Zurück zum Zitat Chawla, N.V., Bowyer, K.W., Hall, L.O., Kegelmeyer, W.P.: SMOTE: synthetic minority over-sampling technique. J. AI Res. 16(1), 321–357 (2002)MATH Chawla, N.V., Bowyer, K.W., Hall, L.O., Kegelmeyer, W.P.: SMOTE: synthetic minority over-sampling technique. J. AI Res. 16(1), 321–357 (2002)MATH
14.
Zurück zum Zitat Schmidt, M.: Graphical model structure learning with l1-regularization. Ph.D. thesis, University of British Columbia (Vancouver) 2010 Schmidt, M.: Graphical model structure learning with l1-regularization. Ph.D. thesis, University of British Columbia (Vancouver) 2010
15.
Zurück zum Zitat Cheng, H., Wang, Y., Sheng, J., Kronenberger, W.G., Mathews, V.P., Hummer, T.A., Saykin, A.J.: Characteristics and variability of structural networks derived from diffusion tensor imaging. NeuroImage 61(4), 1153–1164 (2012)CrossRef Cheng, H., Wang, Y., Sheng, J., Kronenberger, W.G., Mathews, V.P., Hummer, T.A., Saykin, A.J.: Characteristics and variability of structural networks derived from diffusion tensor imaging. NeuroImage 61(4), 1153–1164 (2012)CrossRef
16.
Zurück zum Zitat Honey, C.J., Sporns, O., Cammoun, L., Gigandet, X., Thiran, J.P., Meuli, R., Hagmann, P.: Predicting human resting-state functional connectivity from structural connectivity. Proc. Natl. Acad. Sci. USA 106(6), 2035–40 (2009)CrossRef Honey, C.J., Sporns, O., Cammoun, L., Gigandet, X., Thiran, J.P., Meuli, R., Hagmann, P.: Predicting human resting-state functional connectivity from structural connectivity. Proc. Natl. Acad. Sci. USA 106(6), 2035–40 (2009)CrossRef
17.
Zurück zum Zitat de Reus, M.A., Saenger, V.M., Kahn, R.S., van den Heuvel, M.P.: An edge-centric perspective on the human connectome: link communities in the brain. Phil. Trans. R. Soc. B 369(1653), 20130527 (2014)CrossRef de Reus, M.A., Saenger, V.M., Kahn, R.S., van den Heuvel, M.P.: An edge-centric perspective on the human connectome: link communities in the brain. Phil. Trans. R. Soc. B 369(1653), 20130527 (2014)CrossRef
18.
Zurück zum Zitat Bi, J., Bennett, K.P.: Regression error characteristic curves. In: Proceedings of ICML-2003, pp. 43–50 (2003) Bi, J., Bennett, K.P.: Regression error characteristic curves. In: Proceedings of ICML-2003, pp. 43–50 (2003)
19.
Zurück zum Zitat Zhang, S., Ide, J.S., Li, C.S.R.: Resting-state functional connectivity of the medial superior frontal cortex. Cereb. Cortex 22(1), 99–111 (2012)CrossRef Zhang, S., Ide, J.S., Li, C.S.R.: Resting-state functional connectivity of the medial superior frontal cortex. Cereb. Cortex 22(1), 99–111 (2012)CrossRef
Metadaten
Titel
Predictive Subnetwork Extraction with Structural Priors for Infant Connectomes
verfasst von
Colin J. Brown
Steven P. Miller
Brian G. Booth
Jill G. Zwicker
Ruth E. Grunau
Anne R. Synnes
Vann Chau
Ghassan Hamarneh
Copyright-Jahr
2016
DOI
https://doi.org/10.1007/978-3-319-46720-7_21