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2014 | OriginalPaper | Buchkapitel

3. Some Issues and Challenges When Designing Laboratory Bioassays

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Abstract

This chapter discusses a number of issues and challenges associated with creating more relevant model laboratory bioassays including the following: treatment concentrations, mobility and transport, species density, symbiotic relationships, microorganisms, controls and references, and measurements among others.

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Literatur
Zurück zum Zitat Abbott LK, Gazey C (1994) An ecological view of the formation of VA mycorrhizas. Plant Soil 159:69–78 Abbott LK, Gazey C (1994) An ecological view of the formation of VA mycorrhizas. Plant Soil 159:69–78
Zurück zum Zitat Alef K (1995a) Microscopic methods. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, p 409 Alef K (1995a) Microscopic methods. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, p 409
Zurück zum Zitat Alef K (1995b) ATP content as a parameter to estimate microbial biomass. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, p 410 Alef K (1995b) ATP content as a parameter to estimate microbial biomass. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, p 410
Zurück zum Zitat Alef K, Nannipieri P (1995) Methods in applied soil microbiology and biochemistry. Academic Press, London Alef K, Nannipieri P (1995) Methods in applied soil microbiology and biochemistry. Academic Press, London
Zurück zum Zitat Alexander M (1977) Introduction to soil microbiology, 2nd edn. Wiley, New York Alexander M (1977) Introduction to soil microbiology, 2nd edn. Wiley, New York
Zurück zum Zitat Ames RN, Reid CPP, Ingham ER (1984) Rhizosphere bacterial populations responses to root colonization by a vesicular-arbsucular mycorrhizal fungus. New Phytol 96:555–563 Ames RN, Reid CPP, Ingham ER (1984) Rhizosphere bacterial populations responses to root colonization by a vesicular-arbsucular mycorrhizal fungus. New Phytol 96:555–563
Zurück zum Zitat An M, Johnson IR, Lovett J (1993) Mathematical modeling of allelopathy: biological response to allelochemicals and its interpretation. J Chem Ecol 19:2379–2388 An M, Johnson IR, Lovett J (1993) Mathematical modeling of allelopathy: biological response to allelochemicals and its interpretation. J Chem Ecol 19:2379–2388
Zurück zum Zitat Anaya AL (1999) Allelopathy as a tool in the management of biotic resources in agroecosystems. Crit Rev Plant Sci 18:697–739 Anaya AL (1999) Allelopathy as a tool in the management of biotic resources in agroecosystems. Crit Rev Plant Sci 18:697–739
Zurück zum Zitat Andersen RN (1981) Increasing herbicide tolerance (Glycine max) by increasing seedling rates. Weed Sci 29:336–338 Andersen RN (1981) Increasing herbicide tolerance (Glycine max) by increasing seedling rates. Weed Sci 29:336–338
Zurück zum Zitat Anderson JPE, Domsch KH (1980) Quantities of plant nutrients in the microbial biomass of selected soils. Soil Sci 130:211–216 Anderson JPE, Domsch KH (1980) Quantities of plant nutrients in the microbial biomass of selected soils. Soil Sci 130:211–216
Zurück zum Zitat Andrade G, Mihara RG, Linderman RG, Bethlenfalvay GJ (1997) Bacteria from rhizosphere and hydrosphere of different arbuscular-mycorrhizal fungi. Plant Soil 192:71–79 Andrade G, Mihara RG, Linderman RG, Bethlenfalvay GJ (1997) Bacteria from rhizosphere and hydrosphere of different arbuscular-mycorrhizal fungi. Plant Soil 192:71–79
Zurück zum Zitat Andrade G, Mihara RG, Linderman RG, Bethlenfalvay GJ (1998) Soil aggregation status and rhizobacteria in the mycorrhizosphere. Plant Soil 202:89–96 Andrade G, Mihara RG, Linderman RG, Bethlenfalvay GJ (1998) Soil aggregation status and rhizobacteria in the mycorrhizosphere. Plant Soil 202:89–96
Zurück zum Zitat André HM, Ducarme X, Lebrun P (2002) Soil biodiversity: myth, reality or conning? Oikos 96:3–24 André HM, Ducarme X, Lebrun P (2002) Soil biodiversity: myth, reality or conning? Oikos 96:3–24
Zurück zum Zitat Angel JC, Gagliardi JV (1998) Viruses. In: Sylvia DM, Fuhrmann JJ, Hartel PG, Zuberer DA (eds) Principles and applications of soil microbiology. Prentice Hall Inc, New Jersey, pp 132–148 Angel JC, Gagliardi JV (1998) Viruses. In: Sylvia DM, Fuhrmann JJ, Hartel PG, Zuberer DA (eds) Principles and applications of soil microbiology. Prentice Hall Inc, New Jersey, pp 132–148
Zurück zum Zitat Antunes PM, de Varennes A, Rajcan I, Goss MJ (2006) Accumulation of specific flavonoids in soybean (Glycine max (L.) Merr.) as a function of the early tripartite symbiosis with arbuscular mycorrhizal fungi and Bradyrhizobium japonicum (Krichner) Jordon. Soil Biol Biochem 38:1234–1242 Antunes PM, de Varennes A, Rajcan I, Goss MJ (2006) Accumulation of specific flavonoids in soybean (Glycine max (L.) Merr.) as a function of the early tripartite symbiosis with arbuscular mycorrhizal fungi and Bradyrhizobium japonicum (Krichner) Jordon. Soil Biol Biochem 38:1234–1242
Zurück zum Zitat Badri DV, Zolla G, Bakker MG, Manter DK, Vivanco JM (2013) Potential impact of soil microbiomes on the leaf metabolome and herbivore feeding behavior. New Phytol 198:264–273 Badri DV, Zolla G, Bakker MG, Manter DK, Vivanco JM (2013) Potential impact of soil microbiomes on the leaf metabolome and herbivore feeding behavior. New Phytol 198:264–273
Zurück zum Zitat Bais HP, Vepachedu R, Gilroy S, Callaway RM, Vivanco JM (2010) Allelopathy and exotic plant invasion: from molecules and genes to species interactions. Science 301:1377–1380 Bais HP, Vepachedu R, Gilroy S, Callaway RM, Vivanco JM (2010) Allelopathy and exotic plant invasion: from molecules and genes to species interactions. Science 301:1377–1380
Zurück zum Zitat Baker KF, Snyder WC (1965) Ecology of soil-borne plant pathogens: prelude to biological control. University of California Press, Berkeley Baker KF, Snyder WC (1965) Ecology of soil-borne plant pathogens: prelude to biological control. University of California Press, Berkeley
Zurück zum Zitat Bakken LR (1997) Culturable and nonculturable bacteria in soil. In: van Elsas JD, Trevors JT, Wellington EMH (eds) Modern soil biology. Marcel Dekker Inc, New York, pp 47–61 Bakken LR (1997) Culturable and nonculturable bacteria in soil. In: van Elsas JD, Trevors JT, Wellington EMH (eds) Modern soil biology. Marcel Dekker Inc, New York, pp 47–61
Zurück zum Zitat Barazani O, Friedman J (1999a) Allelopathic bacteria. In: Inderjit, Daskshini KMM, Foy CL (eds) Principles and practices in plant ecology: allelochemical interactions. CRC Press, Boca Raton, pp 149–163 Barazani O, Friedman J (1999a) Allelopathic bacteria. In: Inderjit, Daskshini KMM, Foy CL (eds) Principles and practices in plant ecology: allelochemical interactions. CRC Press, Boca Raton, pp 149–163
Zurück zum Zitat Barazani O, Friedman J (1999b) Allelopathic bacteria and their impact on higher plants. Crit Rev Plant Sci 18:741–755 Barazani O, Friedman J (1999b) Allelopathic bacteria and their impact on higher plants. Crit Rev Plant Sci 18:741–755
Zurück zum Zitat Barto EK, Hilker M, Müller F, Mohney BK, Weidenhamer JD, Rillig MC (2011) The fungal fast lane: common mycorrhizal networks extend bioactive zones of allelochemicals in soil. PLOS ONE 6(11):e27195. doi:10.1371/journal.pone0027195 (www.plosone.org) Barto EK, Hilker M, Müller F, Mohney BK, Weidenhamer JD, Rillig MC (2011) The fungal fast lane: common mycorrhizal networks extend bioactive zones of allelochemicals in soil. PLOS ONE 6(11):e27195. doi:10.1371/journal.pone0027195 (www.​plosone.​org)
Zurück zum Zitat Barto EK, Weidenhamer JD, Cipollini D, Rillig MC (2012) Fungal superhighways: do common mycorrhizal networks enhance below ground communication? Trends Plant Sci 17:633–637 Barto EK, Weidenhamer JD, Cipollini D, Rillig MC (2012) Fungal superhighways: do common mycorrhizal networks enhance below ground communication? Trends Plant Sci 17:633–637
Zurück zum Zitat Bej AK, Perlin M, Atlas RM (1991) Effects of introducing genetically engineered microorganisms on soil microbial community diversity. FEMS Microbiol Ecol 86:169–176 Bej AK, Perlin M, Atlas RM (1991) Effects of introducing genetically engineered microorganisms on soil microbial community diversity. FEMS Microbiol Ecol 86:169–176
Zurück zum Zitat Belz RG (2008) Stimulation versus inhibition—bioactivity of parthenin, a phytochemical from Parthenium hysterophorus L. Int Dose-Response Soc 6:80–96 Belz RG (2008) Stimulation versus inhibition—bioactivity of parthenin, a phytochemical from Parthenium hysterophorus L. Int Dose-Response Soc 6:80–96
Zurück zum Zitat Belz RG, Hurle K, Duke SO (2005) Dose-response—a challenge for allelopathy. Nonlinearity Biol Toxicol Med 3:173–211 Belz RG, Hurle K, Duke SO (2005) Dose-response—a challenge for allelopathy. Nonlinearity Biol Toxicol Med 3:173–211
Zurück zum Zitat Belz RG, Velini ED, Duke SO (2007) Dose/response relationships in allelopathy research. In: Fujii Y, Hiradate S (eds) Allelopathy: new concepts and methodologies. Science Publishers, Enfield, pp 3–29 Belz RG, Velini ED, Duke SO (2007) Dose/response relationships in allelopathy research. In: Fujii Y, Hiradate S (eds) Allelopathy: new concepts and methodologies. Science Publishers, Enfield, pp 3–29
Zurück zum Zitat Bernard EC (1992) Soil nematode biodiversity. Biol Fertil Soils 14:99–103 Bernard EC (1992) Soil nematode biodiversity. Biol Fertil Soils 14:99–103
Zurück zum Zitat Blum U (1996) Allelopathic interactions involving phenolic acids. J Nematol 28:259–267 Blum U (1996) Allelopathic interactions involving phenolic acids. J Nematol 28:259–267
Zurück zum Zitat Blum U (2004) Fate of phenolic allelochemicals in soils-the role of the soil and rhizosphere microorganisms. In: Maciás FA, Galindo JCG, Molinillo JMG, Cutler HG (eds) Allelopathy: chemistry and mode of action of allelopathic chemicals. CRC Press, Boca Raton, pp 57–76 Blum U (2004) Fate of phenolic allelochemicals in soils-the role of the soil and rhizosphere microorganisms. In: Maciás FA, Galindo JCG, Molinillo JMG, Cutler HG (eds) Allelopathy: chemistry and mode of action of allelopathic chemicals. CRC Press, Boca Raton, pp 57–76
Zurück zum Zitat Blum U (2006) Allelopathy: a soil system perspective. In: Reigosa MJ, Pedrol N, González L (eds) Allelopathy: a physiological process with ecological implications. Springer, Dordrecht, pp 299–340 Blum U (2006) Allelopathy: a soil system perspective. In: Reigosa MJ, Pedrol N, González L (eds) Allelopathy: a physiological process with ecological implications. Springer, Dordrecht, pp 299–340
Zurück zum Zitat Blum U (2011) Plant-plant allelopathic interactions: phenolic acids, cover crops, and weed emergence. Springer Science and Business Media, Dordrecht Blum U (2011) Plant-plant allelopathic interactions: phenolic acids, cover crops, and weed emergence. Springer Science and Business Media, Dordrecht
Zurück zum Zitat Blum U, Dalton BR (1985) Effects of ferulic acid, an allelopathic compound, on leaf expansion of cucumber seedlings grown in nutrient bioassay. J Chem Ecol 11:279–301 Blum U, Dalton BR (1985) Effects of ferulic acid, an allelopathic compound, on leaf expansion of cucumber seedlings grown in nutrient bioassay. J Chem Ecol 11:279–301
Zurück zum Zitat Blum U, Gerig TM (2005) Relationships between phenolic acid concentrations, transpiration, water utilization, leaf area expansion, and uptake of phenolic acids: nutrient bioassay studies. J Chem Ecol 31:1907–1932 Blum U, Gerig TM (2005) Relationships between phenolic acid concentrations, transpiration, water utilization, leaf area expansion, and uptake of phenolic acids: nutrient bioassay studies. J Chem Ecol 31:1907–1932
Zurück zum Zitat Blum U, Gerig TM (2006) Interrelationships between p-coumaric acid, evapotranspiration, soil water content, and leaf expansion. J Chem Ecol 32:1817–1834 Blum U, Gerig TM (2006) Interrelationships between p-coumaric acid, evapotranspiration, soil water content, and leaf expansion. J Chem Ecol 32:1817–1834
Zurück zum Zitat Blum U, Rice EL (1969) Inhibition of symbiotic nitrogen-fixation by gallic and tannic acid, and possible roles in old-field succession. Bull Torrey Bot Club 96:531–544 Blum U, Rice EL (1969) Inhibition of symbiotic nitrogen-fixation by gallic and tannic acid, and possible roles in old-field succession. Bull Torrey Bot Club 96:531–544
Zurück zum Zitat Blum U, Shafer SR (1988) Microbial populations and phenolic acids in soils. Soil Biol Biochem 20:793–800 Blum U, Shafer SR (1988) Microbial populations and phenolic acids in soils. Soil Biol Biochem 20:793–800
Zurück zum Zitat Blum U, Dalton BR, Rawlings JO (1984) Effects of ferulic acid and some of its microbial metabolic products on radicle growth of cucumber. J Chem Ecol 8:1169–1191 Blum U, Dalton BR, Rawlings JO (1984) Effects of ferulic acid and some of its microbial metabolic products on radicle growth of cucumber. J Chem Ecol 8:1169–1191
Zurück zum Zitat Blum U, Dalton BR, Shann JR (1985a) Effects of various mixtures of ferulic acid and some of its microbial metabolic products on cucumber leaf expansion and dry matter in nutrient bioassay. J Chem Ecol 11:619–641 Blum U, Dalton BR, Shann JR (1985a) Effects of various mixtures of ferulic acid and some of its microbial metabolic products on cucumber leaf expansion and dry matter in nutrient bioassay. J Chem Ecol 11:619–641
Zurück zum Zitat Blum U, Dalton BR, Shann JR (1985b) Effects of ferulic and p-coumaric acids in nutrient bioassay of cucumber leaf expansion as influenced by pH. J Chem Ecol 11:1567–1582 Blum U, Dalton BR, Shann JR (1985b) Effects of ferulic and p-coumaric acids in nutrient bioassay of cucumber leaf expansion as influenced by pH. J Chem Ecol 11:1567–1582
Zurück zum Zitat Blum U, Gerig TM, Weed SB (1989) Effects of mixtures of phenolic acids on leaf expansion of cucumber seedlings grown in different pH Portsmouth A1 soil materials. J Chem Ecol 15:2413–2423 Blum U, Gerig TM, Weed SB (1989) Effects of mixtures of phenolic acids on leaf expansion of cucumber seedlings grown in different pH Portsmouth A1 soil materials. J Chem Ecol 15:2413–2423
Zurück zum Zitat Blum U, Wentworth TR, Klein K, Worsham AD, King LD, Gerig TM, Lyu S-W (1991) Phenolic acid content of soils from wheat-no till, wheat-conventional till, and fallow-conventional till soybean cropping systems. J Chem Ecol 17:1045–1068 Blum U, Wentworth TR, Klein K, Worsham AD, King LD, Gerig TM, Lyu S-W (1991) Phenolic acid content of soils from wheat-no till, wheat-conventional till, and fallow-conventional till soybean cropping systems. J Chem Ecol 17:1045–1068
Zurück zum Zitat Blum U, Gerig TM, Worsham AD, King LD (1993) Modification of allelopathic effects of p-coumaric acid on morning-glory seedling biomass by glucose, methionine, and nitrate. J Chem Ecol 19:2791–2811 Blum U, Gerig TM, Worsham AD, King LD (1993) Modification of allelopathic effects of p-coumaric acid on morning-glory seedling biomass by glucose, methionine, and nitrate. J Chem Ecol 19:2791–2811
Zurück zum Zitat Blum U, Worsham AD, King LD, Gerig TM (1994) Use of water and EDTA extractions to estimate available (free and reversibly bound) phenolic acids in Cecil soils. J Chem Ecol 20:341–359 Blum U, Worsham AD, King LD, Gerig TM (1994) Use of water and EDTA extractions to estimate available (free and reversibly bound) phenolic acids in Cecil soils. J Chem Ecol 20:341–359
Zurück zum Zitat Blum U, Austin MF, Shafer SR (1999a) The fate and effects of phenolic acids in a plant-microbial-soil model system. In: Macías FA, Galindo JCG, Molinillo JMG, Cutler HG (eds) Recent advances in allelopathy I: a science for the future. Cádiz University Press, Puerto Real, pp 159–166 Blum U, Austin MF, Shafer SR (1999a) The fate and effects of phenolic acids in a plant-microbial-soil model system. In: Macías FA, Galindo JCG, Molinillo JMG, Cutler HG (eds) Recent advances in allelopathy I: a science for the future. Cádiz University Press, Puerto Real, pp 159–166
Zurück zum Zitat Blum U, Shafer SR, Lehman ME (1999b) Evidence for inhibitory allelopathic interactions involving phenolic acids in field soils: concepts vs. an experimental model. Crit Rev Plant Sci 18:673–693 Blum U, Shafer SR, Lehman ME (1999b) Evidence for inhibitory allelopathic interactions involving phenolic acids in field soils: concepts vs. an experimental model. Crit Rev Plant Sci 18:673–693
Zurück zum Zitat Blum U, Staman KL, Flint LJ, Shafer SR (2000) Induction and/or selection of phenolic acid-utilizing bulk-soil and rhizosphere bacteria and their influence on phenolic acid phytotoxicity. J Chem Ecol 26:2059–2078 Blum U, Staman KL, Flint LJ, Shafer SR (2000) Induction and/or selection of phenolic acid-utilizing bulk-soil and rhizosphere bacteria and their influence on phenolic acid phytotoxicity. J Chem Ecol 26:2059–2078
Zurück zum Zitat Bongers T, Bongers M (1998) Functional diversity of nematodes. Appl Soil Ecol 10:239–251 Bongers T, Bongers M (1998) Functional diversity of nematodes. Appl Soil Ecol 10:239–251
Zurück zum Zitat Bradow JM (1991) Relationships between chemical structures and inhibitory activity of C6 through C9 volatiles emitted by plant residues. J Chem Ecol 17:2193–2212 Bradow JM (1991) Relationships between chemical structures and inhibitory activity of C6 through C9 volatiles emitted by plant residues. J Chem Ecol 17:2193–2212
Zurück zum Zitat Bradow JM, Connick WJ Jr (1988a) Volatile methyl ketone seed-germination inhibitors from Amaranthus palmeri S Wats. residues. J Chem Ecol 14:1617–1631 Bradow JM, Connick WJ Jr (1988a) Volatile methyl ketone seed-germination inhibitors from Amaranthus palmeri S Wats. residues. J Chem Ecol 14:1617–1631
Zurück zum Zitat Bradow JM, Connick WJ Jr (1988b) Seed-germination inhibition by volatile alcohols and other compounds associated with Amaranthus palmeri residues. J Chem Ecol 14:1633–1648 Bradow JM, Connick WJ Jr (1988b) Seed-germination inhibition by volatile alcohols and other compounds associated with Amaranthus palmeri residues. J Chem Ecol 14:1633–1648
Zurück zum Zitat Brady NC (1984) The nature and properties of soils, 9th edn. MacMillian Publishing Company, New York Brady NC (1984) The nature and properties of soils, 9th edn. MacMillian Publishing Company, New York
Zurück zum Zitat Brownlee C, Duddridge LA, Malibari A, Read DJ (1983) The structure and function of mycelial systems of ectomycorrhizal roots with special reference to their role in forming inter-plant connections and providing pathways for assimilate and water transport. Plant Soil 71:433–443 Brownlee C, Duddridge LA, Malibari A, Read DJ (1983) The structure and function of mycelial systems of ectomycorrhizal roots with special reference to their role in forming inter-plant connections and providing pathways for assimilate and water transport. Plant Soil 71:433–443
Zurück zum Zitat Budi SW, van Tuinen D, Martinotti G, Gianinazzi S (1999) Isolation from the Sorghum bicolor mycorrhizosphere of bacterium compatible with arbuscular mycorrhiza development and antagonistic towards soil borne fungal pathogens. Appl Environ Microbiol 65:5148–5150 Budi SW, van Tuinen D, Martinotti G, Gianinazzi S (1999) Isolation from the Sorghum bicolor mycorrhizosphere of bacterium compatible with arbuscular mycorrhiza development and antagonistic towards soil borne fungal pathogens. Appl Environ Microbiol 65:5148–5150
Zurück zum Zitat Burges A, Raw F (1967) Soil biology. Academic Press, London Burges A, Raw F (1967) Soil biology. Academic Press, London
Zurück zum Zitat Burrill LC, Appleby AP (1978) Influence of Italian ryegrass density on efficacy of diuron herbicide. Agron J 70:505–506 Burrill LC, Appleby AP (1978) Influence of Italian ryegrass density on efficacy of diuron herbicide. Agron J 70:505–506
Zurück zum Zitat Callaway RM, Cipollini D, Barto K, Thelen GC, Hallett SG, Prati D, Stinson K, Klironomos J (2008) Novel weapons: invasive plant suppresses fungal mutualists in America but not in its native Europe. Ecololy 89:1043–1055 Callaway RM, Cipollini D, Barto K, Thelen GC, Hallett SG, Prati D, Stinson K, Klironomos J (2008) Novel weapons: invasive plant suppresses fungal mutualists in America but not in its native Europe. Ecololy 89:1043–1055
Zurück zum Zitat Carlsen SCK, Pedersen HA, Spliid NH, Formsgaard IS (2012) Fate of soil flavonoids released from white clover (Trifolium repens L.). Appl Environ Soil Sci 2012 (Article ID 743413, 10 p) Carlsen SCK, Pedersen HA, Spliid NH, Formsgaard IS (2012) Fate of soil flavonoids released from white clover (Trifolium repens L.). Appl Environ Soil Sci 2012 (Article ID 743413, 10 p)
Zurück zum Zitat Carson EW (1974) Plant root and its environment. University Press of Virginia, Charlottsville Carson EW (1974) Plant root and its environment. University Press of Virginia, Charlottsville
Zurück zum Zitat Chen F, Liu C-J, Tschaplinski TJ, Zhao N (2009) Genomics of secondary metabolism in Populus: interactions with biotic and abiotic environments. Crit Rev Plant Sci 28:375–392 Chen F, Liu C-J, Tschaplinski TJ, Zhao N (2009) Genomics of secondary metabolism in Populus: interactions with biotic and abiotic environments. Crit Rev Plant Sci 28:375–392
Zurück zum Zitat Clark RB (1997) Arbuscular mycorrhizal adaptation, spore germination, root colonization, and host plant growth and mineral acquisition at low pH. Plant Soil 192:15–22 Clark RB (1997) Arbuscular mycorrhizal adaptation, spore germination, root colonization, and host plant growth and mineral acquisition at low pH. Plant Soil 192:15–22
Zurück zum Zitat Corte L, Rellini P, Roscini L, Fatichenti F, Cardinali G (2010) Development of a novel, FTIR (Fourier transform infrared spectroscopy) based, bioassay for toxicity testing and stress response study. Anal Chim Acta 659:258–265 Corte L, Rellini P, Roscini L, Fatichenti F, Cardinali G (2010) Development of a novel, FTIR (Fourier transform infrared spectroscopy) based, bioassay for toxicity testing and stress response study. Anal Chim Acta 659:258–265
Zurück zum Zitat Curl EA, Harper JD (1990) Fauna-microflora interactions. In: Lynch JM (ed) The rhizosphere. Wiley, Chichester, pp 369–388 Curl EA, Harper JD (1990) Fauna-microflora interactions. In: Lynch JM (ed) The rhizosphere. Wiley, Chichester, pp 369–388
Zurück zum Zitat D’Abrosca B, Scognamiglio M, Fiumano V, Esposito A, Choi YH, Verpoorte R, Fiorentino A (2013) Plant bioassays to assess the effects of allelochemicals on the metabolome of the target species Aegilops geniculata by an NMR-based approach. Phytochemistry 93:27–40 D’Abrosca B, Scognamiglio M, Fiumano V, Esposito A, Choi YH, Verpoorte R, Fiorentino A (2013) Plant bioassays to assess the effects of allelochemicals on the metabolome of the target species Aegilops geniculata by an NMR-based approach. Phytochemistry 93:27–40
Zurück zum Zitat Danell E (1994) Formation and growth of ectomycorrhiza of Cantharellus cibarius. Mycorrhiza 5:89–97 Danell E (1994) Formation and growth of ectomycorrhiza of Cantharellus cibarius. Mycorrhiza 5:89–97
Zurück zum Zitat Davies FT, Puryear JD, Newton RJ, Egilla JN, Grossi JAS (2001) Mycorrhizal fungi enhanced accumulation and tolerance of chromium in sunflower (Helianthus annuus). J Plant Physiol 158:777–786 Davies FT, Puryear JD, Newton RJ, Egilla JN, Grossi JAS (2001) Mycorrhizal fungi enhanced accumulation and tolerance of chromium in sunflower (Helianthus annuus). J Plant Physiol 158:777–786
Zurück zum Zitat Denison RF, Kiers ET (2011) Life histories of symbiotic rhizobium and mycorrhizal fungi. Curr Biol 21:R775–R785 Denison RF, Kiers ET (2011) Life histories of symbiotic rhizobium and mycorrhizal fungi. Curr Biol 21:R775–R785
Zurück zum Zitat Duke SO, Cedergreen N, Velini ED, Belz RG (2006) Hormesis: is it an important factor in herbicide use and allelopathy? Outlook Pest Manag 2006:29–33 (February) Duke SO, Cedergreen N, Velini ED, Belz RG (2006) Hormesis: is it an important factor in herbicide use and allelopathy? Outlook Pest Manag 2006:29–33 (February)
Zurück zum Zitat Duke SO, Baerson SR, Pan Z, Kagan IA, Sánchez-Moreiras A, Reigosa MJ, Pedrol N, Schultz M (2008) Genomic approaches to understanding allelochemical effects on plants. In: Zeng RS, Mallik AU, Luo SM (eds) Allelopathy in sustainable agriculture and forestry. Spring Science Business Media, New York, pp 157–167 Duke SO, Baerson SR, Pan Z, Kagan IA, Sánchez-Moreiras A, Reigosa MJ, Pedrol N, Schultz M (2008) Genomic approaches to understanding allelochemical effects on plants. In: Zeng RS, Mallik AU, Luo SM (eds) Allelopathy in sustainable agriculture and forestry. Spring Science Business Media, New York, pp 157–167
Zurück zum Zitat Duke SO, Bajsa J, Pan Z (2013) Omics methods for probing the mode of action of natural and synthetic phytotoxins. J Chem Ecol 39:333–347 Duke SO, Bajsa J, Pan Z (2013) Omics methods for probing the mode of action of natural and synthetic phytotoxins. J Chem Ecol 39:333–347
Zurück zum Zitat Dunn WB, Ellis DI (2005) Metabolomics: current analytical platforms and methodologies. Trends Anal Chem 24:285–294 Dunn WB, Ellis DI (2005) Metabolomics: current analytical platforms and methodologies. Trends Anal Chem 24:285–294
Zurück zum Zitat Duponnois R, Galiana A, Prin AY (2008) The mycorrhizosphere effect: a multitrophic interaction complex improves mycorrhizal symbiosis and plant growth. In: Siddiqui Za, Akhtar MS, Futai K (eds) Mycorrhizae: sustainable agriculture and forestry. Springer Science Business Media, New York, pp 227–240 Duponnois R, Galiana A, Prin AY (2008) The mycorrhizosphere effect: a multitrophic interaction complex improves mycorrhizal symbiosis and plant growth. In: Siddiqui Za, Akhtar MS, Futai K (eds) Mycorrhizae: sustainable agriculture and forestry. Springer Science Business Media, New York, pp 227–240
Zurück zum Zitat Dykhuizen DE (1998) Santa Rosalia revisited: why are there so many species of bacteria? Antonie van Leeuwenhoek 73:25–33 Dykhuizen DE (1998) Santa Rosalia revisited: why are there so many species of bacteria? Antonie van Leeuwenhoek 73:25–33
Zurück zum Zitat Einhellig FA (1989) Interactive effects of allelochemicals and environmental stress. In: Chou CH, Waller GR (eds) Phytochemical ecology: allelochemicals, mycotoxins, and insect pheromones and allomones, vol 9. Institute of Botany, Academia Sinica Monograph Series, Taipei, pp 101–118 Einhellig FA (1989) Interactive effects of allelochemicals and environmental stress. In: Chou CH, Waller GR (eds) Phytochemical ecology: allelochemicals, mycotoxins, and insect pheromones and allomones, vol 9. Institute of Botany, Academia Sinica Monograph Series, Taipei, pp 101–118
Zurück zum Zitat Einhellig FA, Rasmussen JA (1978) Synergistic inhibitory effects of vanillic and p-hydroxybenzoic acids on radish and grain sorghum. J Chem Ecol 4:425–436 Einhellig FA, Rasmussen JA (1978) Synergistic inhibitory effects of vanillic and p-hydroxybenzoic acids on radish and grain sorghum. J Chem Ecol 4:425–436
Zurück zum Zitat Einhellig FA, Schon MK, Rasmussen JA (1982) Synergistic effects of cinnamic acid compounds on grain sorghum. J Plant Growth Regul 1:251–258 Einhellig FA, Schon MK, Rasmussen JA (1982) Synergistic effects of cinnamic acid compounds on grain sorghum. J Plant Growth Regul 1:251–258
Zurück zum Zitat Ekschmitt K (1998) Population assessments of soil fauna: general criteria for the planning of sampling schemes. Appl Soil Ecol 9:439–445 Ekschmitt K (1998) Population assessments of soil fauna: general criteria for the planning of sampling schemes. Appl Soil Ecol 9:439–445
Zurück zum Zitat Fan TW-M, Bird JA, Brodie EL, Lane AN (2009) 13C-isotopomer-based metabolomics of microbial groups isolated from two forest soils. Metabolomics 5:108–122 Fan TW-M, Bird JA, Brodie EL, Lane AN (2009) 13C-isotopomer-based metabolomics of microbial groups isolated from two forest soils. Metabolomics 5:108–122
Zurück zum Zitat Ferguson BJ, Indrasumunar A, Hayashi S, Lin M-H, Lin Y-H, Reid DE, Gresshoff PM (2010) Molecular analysis of legume nodule development and autoregulation. J Integr Plant Biol 52:61–76 Ferguson BJ, Indrasumunar A, Hayashi S, Lin M-H, Lin Y-H, Reid DE, Gresshoff PM (2010) Molecular analysis of legume nodule development and autoregulation. J Integr Plant Biol 52:61–76
Zurück zum Zitat Flaig W (1971) Organic compounds in soil. Soil Sci 111:19–33 Flaig W (1971) Organic compounds in soil. Soil Sci 111:19–33
Zurück zum Zitat Francis R, Read DJ (1984) Direct transfer of carbon between plants connected by vesicular-arbuscular mycorrhizal mycelium. Nature 307:53–56 Francis R, Read DJ (1984) Direct transfer of carbon between plants connected by vesicular-arbuscular mycorrhizal mycelium. Nature 307:53–56
Zurück zum Zitat Franzini VI, Azcón R, Mendes FL, Aroca R (2010) Interactions between Glomus species and Rhizobium strains affects the nutritional physiology of drought-stressed legume hosts. J Plant Physiol 167:614–619 Franzini VI, Azcón R, Mendes FL, Aroca R (2010) Interactions between Glomus species and Rhizobium strains affects the nutritional physiology of drought-stressed legume hosts. J Plant Physiol 167:614–619
Zurück zum Zitat Fujita K-I, Kubo I (2003) Synergism of polygodial and trans-cinnamic acid on inhibition of root elongation in lettuce seedling growth biomass. J Chem Ecol 29:2253–2262 Fujita K-I, Kubo I (2003) Synergism of polygodial and trans-cinnamic acid on inhibition of root elongation in lettuce seedling growth biomass. J Chem Ecol 29:2253–2262
Zurück zum Zitat Furuno S, Foss S, Wild E, Jones KC, Semple KT, Harms H, Wick LY (2012) Mycelia promote active transport and spatial dispersion of polycyclic aromatic hydrocarbons. Environ Sci Technol 46:5463–5470 Furuno S, Foss S, Wild E, Jones KC, Semple KT, Harms H, Wick LY (2012) Mycelia promote active transport and spatial dispersion of polycyclic aromatic hydrocarbons. Environ Sci Technol 46:5463–5470
Zurück zum Zitat Ganry F (1982) Effects of inoculation with Glomus mosseae on nitrogen fixation by field grown soybeans. Plant Soil 68:321–329 Ganry F (1982) Effects of inoculation with Glomus mosseae on nitrogen fixation by field grown soybeans. Plant Soil 68:321–329
Zurück zum Zitat Garg N, Geetanjali (2007) Symbiotic nitrogen fixation in legume nodules: process and signaling, a review. Agron Sustain Dev 27:59–68 Garg N, Geetanjali (2007) Symbiotic nitrogen fixation in legume nodules: process and signaling, a review. Agron Sustain Dev 27:59–68
Zurück zum Zitat Gawronska H, Golisz A (2006) Allelopathy and biotic stresses. In: Reigosa MJ, Pedrol N, González L (eds) Allelopathy: a physiological process with ecological implications. Springer, Dordrecht, pp 211–227 Gawronska H, Golisz A (2006) Allelopathy and biotic stresses. In: Reigosa MJ, Pedrol N, González L (eds) Allelopathy: a physiological process with ecological implications. Springer, Dordrecht, pp 211–227
Zurück zum Zitat Gehring CA, Mueller RC, Whitham TG (2006) Environmental and genetic effects on the formation of ectomycorrhizal and arbuscular mycorrhizal associations in cottonwoods. Oecologia 149:158–164 Gehring CA, Mueller RC, Whitham TG (2006) Environmental and genetic effects on the formation of ectomycorrhizal and arbuscular mycorrhizal associations in cottonwoods. Oecologia 149:158–164
Zurück zum Zitat Gerig TM, Blum U (1991) Effects of mixtures of four phenolic acids on leaf area expansion of cucumber seedlings grown in Portsmouth B1 soil materials. J Chem Ecol 17:29–40 Gerig TM, Blum U (1991) Effects of mixtures of four phenolic acids on leaf area expansion of cucumber seedlings grown in Portsmouth B1 soil materials. J Chem Ecol 17:29–40
Zurück zum Zitat Gianinazzi S, Gollotte A, Binet M-N, van Tuinen D, Redecker D, Wipf D (2010) Agroecology: the key role of arbuscular mycorrhizas in ecosystem services. Mycorrhiza 20:519–530 Gianinazzi S, Gollotte A, Binet M-N, van Tuinen D, Redecker D, Wipf D (2010) Agroecology: the key role of arbuscular mycorrhizas in ecosystem services. Mycorrhiza 20:519–530
Zurück zum Zitat Gidman E, Goodacre R, Emmett B, Smith AR, Gwynn-Jones D (2003) Investigating plant-plant interference by metabolic fingerprinting. Phytochemistry 63:705–710 Gidman E, Goodacre R, Emmett B, Smith AR, Gwynn-Jones D (2003) Investigating plant-plant interference by metabolic fingerprinting. Phytochemistry 63:705–710
Zurück zum Zitat Giri B, Giang PH, Kumari R, Prasad R, Sachdev M, Garg AP, Oelmüller R, Varma A (2005) Mycorrhizosphere: strategies and functions. In: Buscot F, Varma A (eds) Microorganisms in soils: roles in genesis and functions. Springer-Verlag, Berlin, pp 213–252 Giri B, Giang PH, Kumari R, Prasad R, Sachdev M, Garg AP, Oelmüller R, Varma A (2005) Mycorrhizosphere: strategies and functions. In: Buscot F, Varma A (eds) Microorganisms in soils: roles in genesis and functions. Springer-Verlag, Berlin, pp 213–252
Zurück zum Zitat Goergen E, Chambers JC, Blank R (2009) Effects of water and nitrogen availability on nitrogen contribution by the legume, Lupinus argenteus Pursh. Appl Soil Ecol 42:200–208 Goergen E, Chambers JC, Blank R (2009) Effects of water and nitrogen availability on nitrogen contribution by the legume, Lupinus argenteus Pursh. Appl Soil Ecol 42:200–208
Zurück zum Zitat Griffiths BS, Christensen S, Bonkowski M (2007) Microfaunal interactions in the rhizosphere, how nematodes and protozoa link above- and below ground processes. In: Cardon ZG, Whitbeck JL (eds) The rhizosphere an ecological perspective. Elsevier Academic Press, Amsterdam, pp 57–71 Griffiths BS, Christensen S, Bonkowski M (2007) Microfaunal interactions in the rhizosphere, how nematodes and protozoa link above- and below ground processes. In: Cardon ZG, Whitbeck JL (eds) The rhizosphere an ecological perspective. Elsevier Academic Press, Amsterdam, pp 57–71
Zurück zum Zitat Gryndler M, Hršelová H, Sudová R, Gryndlerová H, Řezáčová V, Merhautová V (2005) Hyphal growth and mycorrhiza formation by the arbuscular mycorrhizal fungus Glomus claroideum BEG 23 is stimulated by humic substances. Mycorrhiza 15:483–488 Gryndler M, Hršelová H, Sudová R, Gryndlerová H, Řezáčová V, Merhautová V (2005) Hyphal growth and mycorrhiza formation by the arbuscular mycorrhizal fungus Glomus claroideum BEG 23 is stimulated by humic substances. Mycorrhiza 15:483–488
Zurück zum Zitat Hall AB, Blum U, Fites RC (1982) Stress modification of allelopathy of Helianthus annuus L. debris on seed germination. Am J Bot 69:776–783 Hall AB, Blum U, Fites RC (1982) Stress modification of allelopathy of Helianthus annuus L. debris on seed germination. Am J Bot 69:776–783
Zurück zum Zitat Hall AB, Blum U, Fites RC (1983) Stress modification of allelopathy of Helianthus annuus L. debris on seedling biomass production of Amaranthus retroflexus L. J Chem Ecol 9:1213–1222 Hall AB, Blum U, Fites RC (1983) Stress modification of allelopathy of Helianthus annuus L. debris on seedling biomass production of Amaranthus retroflexus L. J Chem Ecol 9:1213–1222
Zurück zum Zitat Harder W, Dijkhuizen L (1982) Strategies of mixed substrates utilization in microorganisms. Philos Trans R Soc Lond B Biol Sci 297:459–480 Harder W, Dijkhuizen L (1982) Strategies of mixed substrates utilization in microorganisms. Philos Trans R Soc Lond B Biol Sci 297:459–480
Zurück zum Zitat Harper JL (1975) Allelopathy (a review). Q Rev Biol 50:493–495 Harper JL (1975) Allelopathy (a review). Q Rev Biol 50:493–495
Zurück zum Zitat Harper JL (1977) Population biology of plants. Academic Press, New York Harper JL (1977) Population biology of plants. Academic Press, New York
Zurück zum Zitat Harper JR, Balke NE (1981) Characterization of the inhibition of K+ absorption in oat roots by salicylic acid. Plant Physiol 68:1349–1553 Harper JR, Balke NE (1981) Characterization of the inhibition of K+ absorption in oat roots by salicylic acid. Plant Physiol 68:1349–1553
Zurück zum Zitat Hasbullah, Marschner P, McNeill A (2011) Legume residues arbuscular mycorrhizal colonization and P uptake by wheat. Biol Fertil Soils 47:701–707 Hasbullah, Marschner P, McNeill A (2011) Legume residues arbuscular mycorrhizal colonization and P uptake by wheat. Biol Fertil Soils 47:701–707
Zurück zum Zitat Hawkes CV, DeAngelis KM, Firstone MK (2007) Root interactions with soil microbial communities and processes. In: Cardon ZG, Whitbeck JL (eds) The rhizosphere an ecological perspective. Elsevier Academic Press, Amsterdam, pp 1–29 Hawkes CV, DeAngelis KM, Firstone MK (2007) Root interactions with soil microbial communities and processes. In: Cardon ZG, Whitbeck JL (eds) The rhizosphere an ecological perspective. Elsevier Academic Press, Amsterdam, pp 1–29
Zurück zum Zitat Heisey RM, DeFrank J, Putnam AR (1985) A survey of soil microorganisms for herbicidal activity. In: Thompson AC (ed) The chemistry of allelopathy: biochemical interactions among plants, vol 268. ACS Symposium Series. American Chemical Society, Washington DC, pp 337–349 Heisey RM, DeFrank J, Putnam AR (1985) A survey of soil microorganisms for herbicidal activity. In: Thompson AC (ed) The chemistry of allelopathy: biochemical interactions among plants, vol 268. ACS Symposium Series. American Chemical Society, Washington DC, pp 337–349
Zurück zum Zitat Herridge DF, Pate JS (1977) Utilization of net photosynthate for nitrogen fixation and protein production in annual legumes. Plant Physiol 60:759–764 Herridge DF, Pate JS (1977) Utilization of net photosynthate for nitrogen fixation and protein production in annual legumes. Plant Physiol 60:759–764
Zurück zum Zitat Hirsch PR, Mauchline TH, Clark IM (2010) Bioassay-independent molecular techniques for soil microbial ecology. Soil Biol Biochem 42:878–887 Hirsch PR, Mauchline TH, Clark IM (2010) Bioassay-independent molecular techniques for soil microbial ecology. Soil Biol Biochem 42:878–887
Zurück zum Zitat Hoagland RE (2001) Microbial allelochemicals and pathogens as bioherbicidal agents. Weed Technol 15:835–857 Hoagland RE (2001) Microbial allelochemicals and pathogens as bioherbicidal agents. Weed Technol 15:835–857
Zurück zum Zitat Hoffman DW, Lavy TL (1978) Plant competition for atrazine. Weed Sci 26:94–99 Hoffman DW, Lavy TL (1978) Plant competition for atrazine. Weed Sci 26:94–99
Zurück zum Zitat Huang L-F, Song L-X, Xia X-J, Mao W-H, Shi K, Zhou Y-H, Yu J-Q (2013) Plant-soil feedbacks and soil sickness: the mechanisms to application in agriculture. J Chem Ecol 39:232–242 Huang L-F, Song L-X, Xia X-J, Mao W-H, Shi K, Zhou Y-H, Yu J-Q (2013) Plant-soil feedbacks and soil sickness: the mechanisms to application in agriculture. J Chem Ecol 39:232–242
Zurück zum Zitat Inderjit (2005) Soil microorganism: an important determinant of allelopathic activity. Plant Soil 274:227–236 Inderjit (2005) Soil microorganism: an important determinant of allelopathic activity. Plant Soil 274:227–236
Zurück zum Zitat Inderjit, Muramatsu M, Nishimaru H (1997) On the allelopathic potential of certain terpenoids, phenolics, and their mixtures, and their recovery from soil. Can J Bot 75:888–891 Inderjit, Muramatsu M, Nishimaru H (1997) On the allelopathic potential of certain terpenoids, phenolics, and their mixtures, and their recovery from soil. Can J Bot 75:888–891
Zurück zum Zitat Inderjit, Streibig JC, Olofsdotter M (2002) Joint action of phenolic acid mixtures and its significance in allelopathy research. Physiol Plant 114:422–428 Inderjit, Streibig JC, Olofsdotter M (2002) Joint action of phenolic acid mixtures and its significance in allelopathy research. Physiol Plant 114:422–428
Zurück zum Zitat Inderjit, von Dahl CC, Baldwin IT (2009) Use of silenced plants in allelopathy bioassays: a novel approach. Planta 229:569–575 Inderjit, von Dahl CC, Baldwin IT (2009) Use of silenced plants in allelopathy bioassays: a novel approach. Planta 229:569–575
Zurück zum Zitat Insam H (1990) Are the soil microbial biomass and basal respiration governed by the climatic regime? Soil Biol Biochem 22:535–532 Insam H (1990) Are the soil microbial biomass and basal respiration governed by the climatic regime? Soil Biol Biochem 22:535–532
Zurück zum Zitat Insam H, Rangger A (1997) Microbial communities: functional versus structural approaches. Springer-Verlag, Berlin Insam H, Rangger A (1997) Microbial communities: functional versus structural approaches. Springer-Verlag, Berlin
Zurück zum Zitat Jensen V, Kjøller A, Sørensen LH (1986) Microbial communities in soil. Elsevier Applied Science Publishers, London Jensen V, Kjøller A, Sørensen LH (1986) Microbial communities in soil. Elsevier Applied Science Publishers, London
Zurück zum Zitat Joergensen RG (1995a) The fumigation method. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, pp 376–381 Joergensen RG (1995a) The fumigation method. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, pp 376–381
Zurück zum Zitat Joergensen RG (1995b) The fumigation extraction method. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, pp 382–387 Joergensen RG (1995b) The fumigation extraction method. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, pp 382–387
Zurück zum Zitat Joergensen RG (1995c) The use of the ninhydrin nitrogen reaction for estimating microbial biomass. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, pp 391–393 Joergensen RG (1995c) The use of the ninhydrin nitrogen reaction for estimating microbial biomass. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, pp 391–393
Zurück zum Zitat Johansson JF, Paul LR, Finlay RD (2004) Microbial interactions in the mycorrhizosphere and their significance for sustainable agriculture. FEMS Microbiol Ecol 48:1–13 Johansson JF, Paul LR, Finlay RD (2004) Microbial interactions in the mycorrhizosphere and their significance for sustainable agriculture. FEMS Microbiol Ecol 48:1–13
Zurück zum Zitat Katznelson H, Rouatt JW, Peterson EA (1962) The rhizosphere effect of mycorrhizal and non-mycorrhizal roots of yellow birch seedlings. Can J Bot 40:257–376 Katznelson H, Rouatt JW, Peterson EA (1962) The rhizosphere effect of mycorrhizal and non-mycorrhizal roots of yellow birch seedlings. Can J Bot 40:257–376
Zurück zum Zitat Kennedy AC (1998) The rhizosphere and spermosphere. In: Sylvia DM, Fuhrmann JJ, Hartel PG, Zuberer DA (eds) Principles and applications of soil microbiology. Prentice Hall Inc, New Jersey, pp 389–407 Kennedy AC (1998) The rhizosphere and spermosphere. In: Sylvia DM, Fuhrmann JJ, Hartel PG, Zuberer DA (eds) Principles and applications of soil microbiology. Prentice Hall Inc, New Jersey, pp 389–407
Zurück zum Zitat Kevan DK McE (1965) The soil fauna—its nature and biology. In: Baker KF, Snyder WC (eds) Ecology of soil-borne plant pathogens: prelude to biological control. University of California Press, Berkeley, pp 33–50 Kevan DK McE (1965) The soil fauna—its nature and biology. In: Baker KF, Snyder WC (eds) Ecology of soil-borne plant pathogens: prelude to biological control. University of California Press, Berkeley, pp 33–50
Zurück zum Zitat Kim HK, Choi YH, Verpoorte R (2011) MNR-based plant metabolomics: where do we stand, where do we go? Trends Biotechnol 29:267–275 Kim HK, Choi YH, Verpoorte R (2011) MNR-based plant metabolomics: where do we stand, where do we go? Trends Biotechnol 29:267–275
Zurück zum Zitat Klein K, Blum U (1990) Inhibition of cucumber leaf expansion by ferulic acid in split-root experiments. J Chem Ecol 16:455–463 Klein K, Blum U (1990) Inhibition of cucumber leaf expansion by ferulic acid in split-root experiments. J Chem Ecol 16:455–463
Zurück zum Zitat Kochhar M, Blum U, Reinert RA (1980) Effects of O3 and (or) fescue on ladino clover: interactions. Can J Bot 58:241–249 Kochhar M, Blum U, Reinert RA (1980) Effects of O3 and (or) fescue on ladino clover: interactions. Can J Bot 58:241–249
Zurück zum Zitat Koele N, Turpault M-P, Hildebrand EE, Uroz S, Frey-Klett P (2009) Interactions between mycorrhizal fungi and mycorrhizosphere bacteria during mineral weathering: budget analysis and bacterial quantification. Soil Biol Biochem 41:1035–1942 Koele N, Turpault M-P, Hildebrand EE, Uroz S, Frey-Klett P (2009) Interactions between mycorrhizal fungi and mycorrhizosphere bacteria during mineral weathering: budget analysis and bacterial quantification. Soil Biol Biochem 41:1035–1942
Zurück zum Zitat Koide RT, Li M (1991) Mycorrhizal fungi and the nutrient ecology of three old field annual plant species. Oecologia 85:403–412 Koide RT, Li M (1991) Mycorrhizal fungi and the nutrient ecology of three old field annual plant species. Oecologia 85:403–412
Zurück zum Zitat Knoepp JD, Coleman DC, Crossley DA, Clark JS (2000) Biological indices of soil quality: an ecosystem case study of their use. For Ecol Manag 138:357–368 Knoepp JD, Coleman DC, Crossley DA, Clark JS (2000) Biological indices of soil quality: an ecosystem case study of their use. For Ecol Manag 138:357–368
Zurück zum Zitat Lavelle P, Spain AV (2001) Soil ecology. Kluwer Academic Pub, Dordrecht Lavelle P, Spain AV (2001) Soil ecology. Kluwer Academic Pub, Dordrecht
Zurück zum Zitat Leão PN, Vasconcelos MT, Vasconcelos VM (2009) Allelopathy in freshwater cynanobacteria. Crit Rev Microbiol 35:271–282 Leão PN, Vasconcelos MT, Vasconcelos VM (2009) Allelopathy in freshwater cynanobacteria. Crit Rev Microbiol 35:271–282
Zurück zum Zitat Lehman ME, Blum U (1997) Cover crop debris effects on weed emergence as modified by environmental factors. Allelopath J 4:69–88 Lehman ME, Blum U (1997) Cover crop debris effects on weed emergence as modified by environmental factors. Allelopath J 4:69–88
Zurück zum Zitat Lehman ME, Blum U (1999) Evaluation of ferulic acid uptake as a measurement of allelochemical dose: effective concentration. J Chem Ecol 25:2585–2600 Lehman ME, Blum U (1999) Evaluation of ferulic acid uptake as a measurement of allelochemical dose: effective concentration. J Chem Ecol 25:2585–2600
Zurück zum Zitat Lehman ME, Blum U, Gerig TM (1994) Simultaneous effects of ferulic and p-coumaric acids on cucumber leaf expansion in split-root experiments. J Chem Ecol 20:1773–1782 Lehman ME, Blum U, Gerig TM (1994) Simultaneous effects of ferulic and p-coumaric acids on cucumber leaf expansion in split-root experiments. J Chem Ecol 20:1773–1782
Zurück zum Zitat Li H-H, Inoue M, Nishimaru H, Mizutani J, Tsuzuki E (1993) Interactions of trans-cinnamic acid, its related phenolic allelochemicals, and abscisic acid in seedling growth and seed germination of lettuce. J Chem Ecol 19:1775–1787 Li H-H, Inoue M, Nishimaru H, Mizutani J, Tsuzuki E (1993) Interactions of trans-cinnamic acid, its related phenolic allelochemicals, and abscisic acid in seedling growth and seed germination of lettuce. J Chem Ecol 19:1775–1787
Zurück zum Zitat Li A-F, Zhang Z-G, Xie D-F, Dai L-Q, Zhu L-F, Li J, Liu Z-Q, Yang Y-Q, Wu L-K, Huang M-J, Zhang Z-Y, Lin Q-X (2010) Positive allelopathic stimulation and underlying molecular mechanism of achyranthe under continuous monoculture. Acta Physiol Plant 33:2339–2347 Li A-F, Zhang Z-G, Xie D-F, Dai L-Q, Zhu L-F, Li J, Liu Z-Q, Yang Y-Q, Wu L-K, Huang M-J, Zhang Z-Y, Lin Q-X (2010) Positive allelopathic stimulation and underlying molecular mechanism of achyranthe under continuous monoculture. Acta Physiol Plant 33:2339–2347
Zurück zum Zitat Liebeke M, Brözel VS, Hecker M (2009) Chemical characterization of soil extracts as growth media for the ecophysiological study of bacteria. Appl Microbiol Biotechnol 83:161–173 Liebeke M, Brözel VS, Hecker M (2009) Chemical characterization of soil extracts as growth media for the ecophysiological study of bacteria. Appl Microbiol Biotechnol 83:161–173
Zurück zum Zitat Likar M, Regvar M, Mandic-Mulec I, Stres B, Bothe H (2009) Diversity and seasonal variations of mycorrhiza and rhizosphere bacteria in three common plant species at Slovenian Ljubljana Marsh. Biol Fert Soils 45:573–583 Likar M, Regvar M, Mandic-Mulec I, Stres B, Bothe H (2009) Diversity and seasonal variations of mycorrhiza and rhizosphere bacteria in three common plant species at Slovenian Ljubljana Marsh. Biol Fert Soils 45:573–583
Zurück zum Zitat Linderman RG (1988) Mycorrhizal interactions with the rhizosphere microflora: the mycorrhizosphere effect. Phytopathology 78:366–371 Linderman RG (1988) Mycorrhizal interactions with the rhizosphere microflora: the mycorrhizosphere effect. Phytopathology 78:366–371
Zurück zum Zitat Lombard N, Prestat E, van Elsas JD, Simonet P (2011) Soil-specific limitations for access and analysis of soil microbial communities by metagenomics. FEMS Microbiol Ecol 78:31–49 Lombard N, Prestat E, van Elsas JD, Simonet P (2011) Soil-specific limitations for access and analysis of soil microbial communities by metagenomics. FEMS Microbiol Ecol 78:31–49
Zurück zum Zitat Lorenzo P, Pazos-Malvido E, Reigosa MJ, González L (2010) Differential responses to allelopathic compounds released by the invasive Acacia dealbata Link (Mimosaceae) indicate stimulation of its own seed. Aust J Bot 58:546–553 Lorenzo P, Pazos-Malvido E, Reigosa MJ, González L (2010) Differential responses to allelopathic compounds released by the invasive Acacia dealbata Link (Mimosaceae) indicate stimulation of its own seed. Aust J Bot 58:546–553
Zurück zum Zitat Lyu S-W, Blum U (1990) Effects of ferulic acid, an allelopathic compound, on net P, K, and water uptake by cucumber seedlings in a split-root system. J Chem Ecol 16:2429–2439 Lyu S-W, Blum U (1990) Effects of ferulic acid, an allelopathic compound, on net P, K, and water uptake by cucumber seedlings in a split-root system. J Chem Ecol 16:2429–2439
Zurück zum Zitat Lyu S-W, Blum U, Gerig TM, O’Brien TE (1990) Effects of mixtures of phenolic acids on phosphorus uptake by cucumber seedlings. J Chem Ecol 16:2559–2567 Lyu S-W, Blum U, Gerig TM, O’Brien TE (1990) Effects of mixtures of phenolic acids on phosphorus uptake by cucumber seedlings. J Chem Ecol 16:2559–2567
Zurück zum Zitat Macfadyen A (1968) The animal habitat of soil bacteria. In: Gray TRG, Parkinson D (eds) The ecology of soil borne bacteria. University of Toronto Press, Toronto, pp 66–76 Macfadyen A (1968) The animal habitat of soil bacteria. In: Gray TRG, Parkinson D (eds) The ecology of soil borne bacteria. University of Toronto Press, Toronto, pp 66–76
Zurück zum Zitat Macías FA, Molinillo JMG, Valera RM, Galindo JCG (2007) Allelopathy—a natural alternative for weed control. Pest Manag Sci 63:327–348 Macías FA, Molinillo JMG, Valera RM, Galindo JCG (2007) Allelopathy—a natural alternative for weed control. Pest Manag Sci 63:327–348
Zurück zum Zitat Mallik MAB (1999) Allelopathy and nitrogen fixation in legumes. In: Narwal SS (ed) Allelopathy update: basic and applied aspects, vol 2. Science Publisher, Inc, Enfield, pp 177–200 Mallik MAB (1999) Allelopathy and nitrogen fixation in legumes. In: Narwal SS (ed) Allelopathy update: basic and applied aspects, vol 2. Science Publisher, Inc, Enfield, pp 177–200
Zurück zum Zitat Mallik MAB (2000) Methods to evaluate allelopathic effects on nodulating bacteria and nodulation in legumes. Allelopath J 7:197–214 Mallik MAB (2000) Methods to evaluate allelopathic effects on nodulating bacteria and nodulation in legumes. Allelopath J 7:197–214
Zurück zum Zitat Mallik MAB, Williams RD (2005) Allelopathic growth stimulation of plants and microorganisms. Allelopath J 16:175–198 Mallik MAB, Williams RD (2005) Allelopathic growth stimulation of plants and microorganisms. Allelopath J 16:175–198
Zurück zum Zitat Marshall KC (1986) Advances in microbial ecology, vol 9. Plenum Press, New York Marshall KC (1986) Advances in microbial ecology, vol 9. Plenum Press, New York
Zurück zum Zitat Martin JP, Haider K (1979) Effects of concentration on decomposition of some 14C-labeled phenolic compounds, benzoic acid, glucose, wheat straw, and Chlorella protein in soil. Soil Sci Soc Am J 43:917–920 Martin JP, Haider K (1979) Effects of concentration on decomposition of some 14C-labeled phenolic compounds, benzoic acid, glucose, wheat straw, and Chlorella protein in soil. Soil Sci Soc Am J 43:917–920
Zurück zum Zitat Metz TO (2011) Metabolic profiling: methods and protocols. In: Walker JM (ed) Methods in molecular biology. Humana Press, New York Metz TO (2011) Metabolic profiling: methods and protocols. In: Walker JM (ed) Methods in molecular biology. Humana Press, New York
Zurück zum Zitat Meyer JR, Linderman RG (1986) Selective influence on populations of rhizosphere or rhizoplane bacteria and actinomycetes by mycorrhizas formed by Glomus fasciculatum. Soil Biol Biochem 18:191–196 Meyer JR, Linderman RG (1986) Selective influence on populations of rhizosphere or rhizoplane bacteria and actinomycetes by mycorrhizas formed by Glomus fasciculatum. Soil Biol Biochem 18:191–196
Zurück zum Zitat Miller HJ, Liljeroth E, Henken G, Van Veen JA (1990) Fluctuations in the fluorescent pseudomonad and actinomycete populations of rhizosphere and rhizoplane during the growth of spring wheat. Can J Microbiol 36:254–258 Miller HJ, Liljeroth E, Henken G, Van Veen JA (1990) Fluctuations in the fluorescent pseudomonad and actinomycete populations of rhizosphere and rhizoplane during the growth of spring wheat. Can J Microbiol 36:254–258
Zurück zum Zitat Mohney BK, Matz T, LaMoreaux J, Wilcox DS, Gimsing AL, Mayer P, Weidenhamer JD (2009) In situ silicone tube microextraction: a new method for undisturbed sampling of root-exuded thiophenes from marigold (Tagetes erecta L) in soil. J Chem Ecol 35:1279–1287 Mohney BK, Matz T, LaMoreaux J, Wilcox DS, Gimsing AL, Mayer P, Weidenhamer JD (2009) In situ silicone tube microextraction: a new method for undisturbed sampling of root-exuded thiophenes from marigold (Tagetes erecta L) in soil. J Chem Ecol 35:1279–1287
Zurück zum Zitat Molisch H (2001) The influence of one plant on another: allelopathy. In: Narwal SS (ed), LaFleur LJ, Mallick MAB (translators; from German). Scientific Publisher, Jodhpur, India Molisch H (2001) The influence of one plant on another: allelopathy. In: Narwal SS (ed), LaFleur LJ, Mallick MAB (translators; from German). Scientific Publisher, Jodhpur, India
Zurück zum Zitat Mortier V, Holsters M, Goormachtig S (2012) Never too many? How legumes control nodule numbers. Plant Cell Environ 35:245–258 Mortier V, Holsters M, Goormachtig S (2012) Never too many? How legumes control nodule numbers. Plant Cell Environ 35:245–258
Zurück zum Zitat Moyer-Henry KA, Burton JW, Israel DW, Rufty TW (2006) Nitrogen transfer between plants: a 15N natural abundance study with crop and weed species. Plant Soil 282:7–20 Moyer-Henry KA, Burton JW, Israel DW, Rufty TW (2006) Nitrogen transfer between plants: a 15N natural abundance study with crop and weed species. Plant Soil 282:7–20
Zurück zum Zitat Mummey DL, Rillig MC (2006) The invasive plant species Centaurea maculosa alters arbuscular mycorrhizal fungal communities in the field. Plant Soil 288:81–90 Mummey DL, Rillig MC (2006) The invasive plant species Centaurea maculosa alters arbuscular mycorrhizal fungal communities in the field. Plant Soil 288:81–90
Zurück zum Zitat Mundt JO, Hinkle NF (1976) Bacteria within ovules and seeds. Appl Environ Microbiol 32:694–698 Mundt JO, Hinkle NF (1976) Bacteria within ovules and seeds. Appl Environ Microbiol 32:694–698
Zurück zum Zitat Narasimhan K, Basheer C, Bajic VB, Swarup S (2003) Enhancement of plant-microbe interactions using a rhizosphere metabolomics-driven approach and its application in the removal of polychlorinated biphenyls. Plant Physiol 132:146–153 Narasimhan K, Basheer C, Bajic VB, Swarup S (2003) Enhancement of plant-microbe interactions using a rhizosphere metabolomics-driven approach and its application in the removal of polychlorinated biphenyls. Plant Physiol 132:146–153
Zurück zum Zitat Nichols KA (2008) Indirect contribution of AM fungi and soil aggregation to plant growth and protection. In: Siddiqui ZA, Akhtar MS, Futai K (eds) Mycorrhizae: sustainable agriculture and forestry. Springer Science and Business Media, New York, pp 177–194 Nichols KA (2008) Indirect contribution of AM fungi and soil aggregation to plant growth and protection. In: Siddiqui ZA, Akhtar MS, Futai K (eds) Mycorrhizae: sustainable agriculture and forestry. Springer Science and Business Media, New York, pp 177–194
Zurück zum Zitat Nguyen Q-T, Merlo ME, Medema MH, Jankevics A, Breitling R, Takano E (2012) Metabolomics methods for the synthetic biology of secondary metabolism. FEBS Lett 586:2177–2183 Nguyen Q-T, Merlo ME, Medema MH, Jankevics A, Breitling R, Takano E (2012) Metabolomics methods for the synthetic biology of secondary metabolism. FEBS Lett 586:2177–2183
Zurück zum Zitat Oswald ET, Ferchau HA (1968) Bacterial associations of coniferous mycorrhizae. Plant Soil 28:187–192 Oswald ET, Ferchau HA (1968) Bacterial associations of coniferous mycorrhizae. Plant Soil 28:187–192
Zurück zum Zitat Øvreås L (2000) Population and community level approaches for analyzing microbial diversity in natural environments. Ecol Lett 3:236–251 Øvreås L (2000) Population and community level approaches for analyzing microbial diversity in natural environments. Ecol Lett 3:236–251
Zurück zum Zitat Papanastasiou AC (1982) Kinetics of biodegradation of 2.4-dichlorophenoxyacetate in the presence of glucose. Biotechnol Bioeng 24:2001–2011 Papanastasiou AC (1982) Kinetics of biodegradation of 2.4-dichlorophenoxyacetate in the presence of glucose. Biotechnol Bioeng 24:2001–2011
Zurück zum Zitat Papavizas GC, Davey CB (1961) Extent and nature of the rhizosphere of Lupinus. Plant Soil 14:215–236 Papavizas GC, Davey CB (1961) Extent and nature of the rhizosphere of Lupinus. Plant Soil 14:215–236
Zurück zum Zitat Parekh NR, Bardgett RD (2002) The characterization of microbial communities in environmental samples. In: Keith-Roach MJ, Livens FR (eds) Interactions of microorganisms with radionuclides. Elsevier Science Ltd, Amsterdam, pp 37–60 Parekh NR, Bardgett RD (2002) The characterization of microbial communities in environmental samples. In: Keith-Roach MJ, Livens FR (eds) Interactions of microorganisms with radionuclides. Elsevier Science Ltd, Amsterdam, pp 37–60
Zurück zum Zitat Paul EA, Clark FE (2007) Soil microbiology and biochemistry, 2nd edn. Academic Press, San Diego Paul EA, Clark FE (2007) Soil microbiology and biochemistry, 2nd edn. Academic Press, San Diego
Zurück zum Zitat Pedrol N, González L, Reigosa MJ (2006) Allelopathy and abiotic stresses. In: Reigosa MJ, Pedrol N, González L (eds) Allelopathy: a physiological process with ecological implications. Springer, Dordrecht, pp 171–209 Pedrol N, González L, Reigosa MJ (2006) Allelopathy and abiotic stresses. In: Reigosa MJ, Pedrol N, González L (eds) Allelopathy: a physiological process with ecological implications. Springer, Dordrecht, pp 171–209
Zurück zum Zitat Perry DA, Amaranthus MP, Borchers JG, Borchers SL, Brainerd RE (1989) Bootstrapping in ecosystems. BioScience 39:230–237 Perry DA, Amaranthus MP, Borchers JG, Borchers SL, Brainerd RE (1989) Bootstrapping in ecosystems. BioScience 39:230–237
Zurück zum Zitat Petersen H, Luxton M (1982) A comparative analysis of soil fauna populations and their role in decomposition processes. Oikos 39:288–388 Petersen H, Luxton M (1982) A comparative analysis of soil fauna populations and their role in decomposition processes. Oikos 39:288–388
Zurück zum Zitat Phillipson J (1971) Methods of study in quantitative soil ecology: population, production and energy flow. IBP Handbook, vol 18. Blackwell Scientific Publications, Oxford Phillipson J (1971) Methods of study in quantitative soil ecology: population, production and energy flow. IBP Handbook, vol 18. Blackwell Scientific Publications, Oxford
Zurück zum Zitat Pue KJ, Blum U, Gerig TM, Shafer SR (1995) Mechanism by which noninhibitory concentrations of glucose increase inhibitory activity of p-coumaric acid on morning-glory seedling biomass accumulation. J Chem Ecol 21:833–847 Pue KJ, Blum U, Gerig TM, Shafer SR (1995) Mechanism by which noninhibitory concentrations of glucose increase inhibitory activity of p-coumaric acid on morning-glory seedling biomass accumulation. J Chem Ecol 21:833–847
Zurück zum Zitat Putnam AR, DeFrank J (1983) Use of phytotoxic plant residues for selective weed control. Crop Prot 2:173–181 Putnam AR, DeFrank J (1983) Use of phytotoxic plant residues for selective weed control. Crop Prot 2:173–181
Zurück zum Zitat Putnam AR, DeFrank J, Barnes JP (1983) Exploitation of allelopathy for weed control in annual and perennial cropping systems. J Chem Ecol 9:1001–1010 Putnam AR, DeFrank J, Barnes JP (1983) Exploitation of allelopathy for weed control in annual and perennial cropping systems. J Chem Ecol 9:1001–1010
Zurück zum Zitat Qu XH, Wang JG (2008) Effects of amendments with different phenolic acids on soil microbial biomass, activity, and community structure. Appl Soil Ecol 39:172–179 Qu XH, Wang JG (2008) Effects of amendments with different phenolic acids on soil microbial biomass, activity, and community structure. Appl Soil Ecol 39:172–179
Zurück zum Zitat Ramanujam MP, Jaleel A, Kumaravelu G (1998) Effects of salicylic acid on nodulation, nitrogenous compounds and related enzymes of Vigna mungo. Biol Plant 41:307–311 Ramanujam MP, Jaleel A, Kumaravelu G (1998) Effects of salicylic acid on nodulation, nitrogenous compounds and related enzymes of Vigna mungo. Biol Plant 41:307–311
Zurück zum Zitat Rasmussen JA, Einhellig FA (1977) Synergistic inhibitory effects of p-coumaric and ferulic acids on germination and growth of grain sorghum. J Chem Ecol 3:197–205 Rasmussen JA, Einhellig FA (1977) Synergistic inhibitory effects of p-coumaric and ferulic acids on germination and growth of grain sorghum. J Chem Ecol 3:197–205
Zurück zum Zitat Read D (1997) The ties that bind. Nature 388:517–518 Read D (1997) The ties that bind. Nature 388:517–518
Zurück zum Zitat Reaves ML, Rabinowitz JD (2011) Metabolomics in systems microbiology. Curr Opin Biotechnol 22:17–25 Reaves ML, Rabinowitz JD (2011) Metabolomics in systems microbiology. Curr Opin Biotechnol 22:17–25
Zurück zum Zitat Redecker D, von Berswordt-Wallrabe P, Beck DP (1997) Influence of inoculation with arbuscular mycorrhizal fungi on stable isotopes of nitrogen on Phaseoulus vulgaris. Biol Fertil Soils 23:344–346 Redecker D, von Berswordt-Wallrabe P, Beck DP (1997) Influence of inoculation with arbuscular mycorrhizal fungi on stable isotopes of nitrogen on Phaseoulus vulgaris. Biol Fertil Soils 23:344–346
Zurück zum Zitat Reigosa MJ, Souto XC, González L (1999) Effects of phenolic compounds on germination of six weeds species. Plant Growth Regul 28:83–88 Reigosa MJ, Souto XC, González L (1999) Effects of phenolic compounds on germination of six weeds species. Plant Growth Regul 28:83–88
Zurück zum Zitat Rice EL (1984) Allelopathy. Academic Press, London Rice EL (1984) Allelopathy. Academic Press, London
Zurück zum Zitat Rice EL (1986) Allelopathic growth stimulation. In: Putnam AR, Tang C-S (eds) The science of allelopathy. Wiley, New York, pp 23–42 Rice EL (1986) Allelopathic growth stimulation. In: Putnam AR, Tang C-S (eds) The science of allelopathy. Wiley, New York, pp 23–42
Zurück zum Zitat Rinaudo V, Bárberi P, Giovannetti M, van der Heijden MGA (2010) Mycorrhizal fungi suppress aggressive agricultural weeds. Plant Soil 333:7–20 Rinaudo V, Bárberi P, Giovannetti M, van der Heijden MGA (2010) Mycorrhizal fungi suppress aggressive agricultural weeds. Plant Soil 333:7–20
Zurück zum Zitat Robinson CH, Bruce KD (2002) Natural microbial communities. In: Keith-Roach MJ, Livens FR (eds) Interactions of microorganisms with radionuclides. Elsevier Science Ltd, Amsterdam, pp 1–35 Robinson CH, Bruce KD (2002) Natural microbial communities. In: Keith-Roach MJ, Livens FR (eds) Interactions of microorganisms with radionuclides. Elsevier Science Ltd, Amsterdam, pp 1–35
Zurück zum Zitat Rodríguez-Navarro DN, Oliver IM, Contreras MA, Ruiz-Sainz JE (2011) Soybean interactions with soil microbes, agronomical and molecular aspects. Agron Sustain Dev 31:173–190 Rodríguez-Navarro DN, Oliver IM, Contreras MA, Ruiz-Sainz JE (2011) Soybean interactions with soil microbes, agronomical and molecular aspects. Agron Sustain Dev 31:173–190
Zurück zum Zitat Rouatt JW, Katznelson H (1961) A study of the bacteria on the root surface and in the rhizosphere soil of crop plants. J Appl Bacteriol 24:164–171 Rouatt JW, Katznelson H (1961) A study of the bacteria on the root surface and in the rhizosphere soil of crop plants. J Appl Bacteriol 24:164–171
Zurück zum Zitat Rouatt JW, Katznelson H, Payne TMB (1960) Statistical evaluation of the rhizosphere effect. Soil Sci Soc Am J 24:271–273 Rouatt JW, Katznelson H, Payne TMB (1960) Statistical evaluation of the rhizosphere effect. Soil Sci Soc Am J 24:271–273
Zurück zum Zitat Rovira AD (1991) Rhizosphere research—85 years of progress and frustration. In: Keister DL, Cregan PB (eds) Beltsville symposium in agricultural research, vol 14: the rhizosphere and plant growth. Kluwer Academic Press, Dordrecht, pp 3–13 Rovira AD (1991) Rhizosphere research—85 years of progress and frustration. In: Keister DL, Cregan PB (eds) Beltsville symposium in agricultural research, vol 14: the rhizosphere and plant growth. Kluwer Academic Press, Dordrecht, pp 3–13
Zurück zum Zitat Rovira AD, Davey CB (1974) Biology of the rhizosphere. In: Carson EW (ed) The plant root and its environment. University Press of Virginia, Charlottsville, pp 153–203 Rovira AD, Davey CB (1974) Biology of the rhizosphere. In: Carson EW (ed) The plant root and its environment. University Press of Virginia, Charlottsville, pp 153–203
Zurück zum Zitat Rovira AD, Newman EI, Bowen HJ, Campbell R (1974) Quantitative assessment of the rhizoplane microflora by direct microscope. Soil Biol Biochem 6:211–216 Rovira AD, Newman EI, Bowen HJ, Campbell R (1974) Quantitative assessment of the rhizoplane microflora by direct microscope. Soil Biol Biochem 6:211–216
Zurück zum Zitat Rovira AD, Foster RC, Martin JK (1979) Note on terminology: origin, nature and nomenclature of the organic materials in the rhizosphere. In: Harley JL, Russell RS (eds) The soil-root interface. Academic Press, London, pp 1–4 Rovira AD, Foster RC, Martin JK (1979) Note on terminology: origin, nature and nomenclature of the organic materials in the rhizosphere. In: Harley JL, Russell RS (eds) The soil-root interface. Academic Press, London, pp 1–4
Zurück zum Zitat Schmelz EA, Engelberth J, Alborn HT, O’Donnell P, Sammons M, Toshima H, Tumlinson JH (2003) Simultaneous analysis of phytohormes, phytotoxins, and volatile organic compounds in plants. Proc Natl Acad Sci U S A 100:10552–10557 Schmelz EA, Engelberth J, Alborn HT, O’Donnell P, Sammons M, Toshima H, Tumlinson JH (2003) Simultaneous analysis of phytohormes, phytotoxins, and volatile organic compounds in plants. Proc Natl Acad Sci U S A 100:10552–10557
Zurück zum Zitat Schmidt EL (1991) Methods for microbial autecology in the soil rhizosphere. In: Keister DL, Cregan PB (eds) Beltsville symposium in agricultural research, vol 14: the rhizosphere and plant growth. Kluwer Academic Press, Dordrecht, pp 81–89 Schmidt EL (1991) Methods for microbial autecology in the soil rhizosphere. In: Keister DL, Cregan PB (eds) Beltsville symposium in agricultural research, vol 14: the rhizosphere and plant growth. Kluwer Academic Press, Dordrecht, pp 81–89
Zurück zum Zitat Schmidt SK, Ley RE (1999) Microbial competition and soil structure limit the expression of allelopathy. In: Inderjit, Dakshini KMM, Foy CL (eds) Principles and practices in plant ecology: allelochemical interactions. CRC Press, Boca Raton, pp 339–351 Schmidt SK, Ley RE (1999) Microbial competition and soil structure limit the expression of allelopathy. In: Inderjit, Dakshini KMM, Foy CL (eds) Principles and practices in plant ecology: allelochemical interactions. CRC Press, Boca Raton, pp 339–351
Zurück zum Zitat Secilia J, Bagyaraj DJ (1987) Bacteria and actinomycetes associated with pot bioassay of vesicular-arbuscular mycorrhizas. Can J Microbiol 33:1069–1073 Secilia J, Bagyaraj DJ (1987) Bacteria and actinomycetes associated with pot bioassay of vesicular-arbuscular mycorrhizas. Can J Microbiol 33:1069–1073
Zurück zum Zitat Senaratne R, Ratnasinghe DS (1993) Ontogenetic variation in nitrogen fixation and accumulation of nitrogen in mungbean, blackgram, cowpea, and groundnut. Biol Fertil Soils 16:125–130 Senaratne R, Ratnasinghe DS (1993) Ontogenetic variation in nitrogen fixation and accumulation of nitrogen in mungbean, blackgram, cowpea, and groundnut. Biol Fertil Soils 16:125–130
Zurück zum Zitat Shafer SR, Blum U (1991) Influence of phenolic acids on microbial populations in the rhizosphere of cucumber. J Chem Ecol 17:369–389 Shafer SR, Blum U (1991) Influence of phenolic acids on microbial populations in the rhizosphere of cucumber. J Chem Ecol 17:369–389
Zurück zum Zitat Shafer SR, Blum U, Horton SJ, Hesterberg DL (1998) Biomass of tomato seedlings exposed to an allelopathic phenolic acid and enriched atmospheric carbon dioxide. Water Air Soil Pollut 106:123–136 Shafer SR, Blum U, Horton SJ, Hesterberg DL (1998) Biomass of tomato seedlings exposed to an allelopathic phenolic acid and enriched atmospheric carbon dioxide. Water Air Soil Pollut 106:123–136
Zurück zum Zitat Shann JR, Blum U (1987) The uptake of ferulic and p-hydroxybenzoic acids by Cucumis sativus. Phytochemistry 26:2959–2964 Shann JR, Blum U (1987) The uptake of ferulic and p-hydroxybenzoic acids by Cucumis sativus. Phytochemistry 26:2959–2964
Zurück zum Zitat Sharma MP, Reddy UG, Adholeya A (2011) Response of arbuscular fungi on wheat (Triticum aestivum L.) grown conventionally and on beds in a sandy loam soil. Indian J Microbiol 51:384–389 Sharma MP, Reddy UG, Adholeya A (2011) Response of arbuscular fungi on wheat (Triticum aestivum L.) grown conventionally and on beds in a sandy loam soil. Indian J Microbiol 51:384–389
Zurück zum Zitat Sheu SS, Ruess L, Bankowski M (2005) Interactions between microorganisms and soil micro- and mesofauna. In: Buscot F, Varma A (eds) Microorganisms in soils: roles in genesis and functions. Springer Verlag, Berlin, pp 253–275 Sheu SS, Ruess L, Bankowski M (2005) Interactions between microorganisms and soil micro- and mesofauna. In: Buscot F, Varma A (eds) Microorganisms in soils: roles in genesis and functions. Springer Verlag, Berlin, pp 253–275
Zurück zum Zitat Siddiqui ZA, Pichtel J (2008) Mycorrhizae: an overview. In: Siddiqui ZA, Akhtar MS, Futai K (eds) Mycorrhizae: sustainable agriculture and forestry. Springer Science and Business Media, New York, pp 1–35 Siddiqui ZA, Pichtel J (2008) Mycorrhizae: an overview. In: Siddiqui ZA, Akhtar MS, Futai K (eds) Mycorrhizae: sustainable agriculture and forestry. Springer Science and Business Media, New York, pp 1–35
Zurück zum Zitat Simard SW, Perry DA, Jones MD, Myrold DD, Durall DM, Molina R (1997) Net transfer of carbon between ectomycorrhizal tree species in the field. Nature 388:579–582 Simard SW, Perry DA, Jones MD, Myrold DD, Durall DM, Molina R (1997) Net transfer of carbon between ectomycorrhizal tree species in the field. Nature 388:579–582
Zurück zum Zitat Sinkkonen A (2001) Density-dependent chemical interference—an extension of the biological response model. J Chem Ecol 27:1513–1523 Sinkkonen A (2001) Density-dependent chemical interference—an extension of the biological response model. J Chem Ecol 27:1513–1523
Zurück zum Zitat Sinkkonen A (2003) A model describing chemical interference caused by decomposing residues at different densities of growing plants. Plant Soil 250:315–322 Sinkkonen A (2003) A model describing chemical interference caused by decomposing residues at different densities of growing plants. Plant Soil 250:315–322
Zurück zum Zitat Sinkkonen A (2007) Modeling the effects of autotoxicity on density-dependent phytotoxicity. J Theor Biol 244:218–227 Sinkkonen A (2007) Modeling the effects of autotoxicity on density-dependent phytotoxicity. J Theor Biol 244:218–227
Zurück zum Zitat Siqueira JO, Nair MG, Hammerschmidt R, Safir GR (1991) Significance of phenolic compounds in plant-soil-microbial systems. Crit Rev Plant Sci 10:63–121 Siqueira JO, Nair MG, Hammerschmidt R, Safir GR (1991) Significance of phenolic compounds in plant-soil-microbial systems. Crit Rev Plant Sci 10:63–121
Zurück zum Zitat Smith SE, Read DJ (2008) Mycorrhizal symbiosis, 3rd edn. Elsevier, Oxford Smith SE, Read DJ (2008) Mycorrhizal symbiosis, 3rd edn. Elsevier, Oxford
Zurück zum Zitat Sohlenius B (1980) Abundance, biomass, and contribution to energy flow by soil nematodes in terrestrial ecosystems. Oikos 34:186–194 Sohlenius B (1980) Abundance, biomass, and contribution to energy flow by soil nematodes in terrestrial ecosystems. Oikos 34:186–194
Zurück zum Zitat Song R (2012) Growth promotion of maize by soybean root exudates. Legum Res 35:226–230 Song R (2012) Growth promotion of maize by soybean root exudates. Legum Res 35:226–230
Zurück zum Zitat Sørensen J (1997) The rhizosphere as a habitat for soil microorganisms. In: van Elsas JD, Trevors JT, Wellington EMH (eds) Modern soil biology. Marcel Dekker Inc, New York, pp 21–45 Sørensen J (1997) The rhizosphere as a habitat for soil microorganisms. In: van Elsas JD, Trevors JT, Wellington EMH (eds) Modern soil biology. Marcel Dekker Inc, New York, pp 21–45
Zurück zum Zitat Sparling GP (1995) The substrate-induced respiration method. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, pp 397–404 Sparling GP (1995) The substrate-induced respiration method. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, pp 397–404
Zurück zum Zitat Sparling GP, Ord BG, Vaughan D (1981) Changes in microbial biomass and activity in soils amended with phenolic acids. Soil Biol Biochem 13:455–460 Sparling GP, Ord BG, Vaughan D (1981) Changes in microbial biomass and activity in soils amended with phenolic acids. Soil Biol Biochem 13:455–460
Zurück zum Zitat Sprent JI, James EK (2007) Legume evolution: where do nodules and mycorrhizas fit in? Plant Physiol 144:575–581 Sprent JI, James EK (2007) Legume evolution: where do nodules and mycorrhizas fit in? Plant Physiol 144:575–581
Zurück zum Zitat Staley TE, Lawrence EG, Nance EL (1992) Influence of a plant growth-promoting pseudomonad and vesicular-arbuscular mycorrhizal fungus on alfalfa and birdsfoot trefoil growth and nodulation. Biol Fertil Soils 14:175–180 Staley TE, Lawrence EG, Nance EL (1992) Influence of a plant growth-promoting pseudomonad and vesicular-arbuscular mycorrhizal fungus on alfalfa and birdsfoot trefoil growth and nodulation. Biol Fertil Soils 14:175–180
Zurück zum Zitat Staman K, Blum U, Louws F, Robertson D (2001) Can simultaneous inhibition of seedling growth and stimulation of rhizosphere bacterial populations provide evidence for phytotoxin transfer from plant residues in the bulk soil to the rhizosphere of sensitive species? J Chem Ecol 27:807–829 Staman K, Blum U, Louws F, Robertson D (2001) Can simultaneous inhibition of seedling growth and stimulation of rhizosphere bacterial populations provide evidence for phytotoxin transfer from plant residues in the bulk soil to the rhizosphere of sensitive species? J Chem Ecol 27:807–829
Zurück zum Zitat Steel RGD, Torrie JH (1997) Principles and procedures of statistics: a biometrical approach, 3rd edn. McGraw-Hill, New York Steel RGD, Torrie JH (1997) Principles and procedures of statistics: a biometrical approach, 3rd edn. McGraw-Hill, New York
Zurück zum Zitat Stout JD, Heal OW (1967) Protozoa. In: Burges A, Raw F (eds) Soil biology. Academic Press, London, pp 149–195 Stout JD, Heal OW (1967) Protozoa. In: Burges A, Raw F (eds) Soil biology. Academic Press, London, pp 149–195
Zurück zum Zitat Stowe LG (1979) Allelopathy and its influence on the distribution of plants in an Illinois old-field. J Ecol 67:1065–1985 Stowe LG (1979) Allelopathy and its influence on the distribution of plants in an Illinois old-field. J Ecol 67:1065–1985
Zurück zum Zitat Stowe LG, Osborn A (1980) The influence of nitrogen and phosphorus levels on the phytotoxicity of phenolic acids. Can J Bot 58:1149–1153 Stowe LG, Osborn A (1980) The influence of nitrogen and phosphorus levels on the phytotoxicity of phenolic acids. Can J Bot 58:1149–1153
Zurück zum Zitat Sugawara M, Sadowsky MJ (2011) Legume-microbe symbioses. In: Rosenberg E, Gophna U (eds) Beneficial microorganisms in multicellular life forms. Springer-Verlag, Berlin, pp 73–88 Sugawara M, Sadowsky MJ (2011) Legume-microbe symbioses. In: Rosenberg E, Gophna U (eds) Beneficial microorganisms in multicellular life forms. Springer-Verlag, Berlin, pp 73–88
Zurück zum Zitat Sugi SF, Schimel JP (1993) Decomposition and biomass incorporation of 14C-labeled glucose and phenolics in taiga forest floor: effects of substrate quality, successional state, and season. Soil Biol Biochem 25:1379–1389 Sugi SF, Schimel JP (1993) Decomposition and biomass incorporation of 14C-labeled glucose and phenolics in taiga forest floor: effects of substrate quality, successional state, and season. Soil Biol Biochem 25:1379–1389
Zurück zum Zitat Summer LW, Mendes P, Dixon RA (2003) Plant metabolomics: large-scale phytochemistry in their functional genomics era. Phytochemistry 62:817–836 Summer LW, Mendes P, Dixon RA (2003) Plant metabolomics: large-scale phytochemistry in their functional genomics era. Phytochemistry 62:817–836
Zurück zum Zitat Sylvia DM, Fuhrmann JJ, Hartel PG, Zuberer DA (2004) Principles and application of soil microbiology, 2nd edn. Prentice Hall, Upper Saddle River Sylvia DM, Fuhrmann JJ, Hartel PG, Zuberer DA (2004) Principles and application of soil microbiology, 2nd edn. Prentice Hall, Upper Saddle River
Zurück zum Zitat Talaat NB, Shawky BT (2011) Influence of arbuscular mycorrhizae on yield, nutrients, organic solutes, and antioxidant enzymes of two wheat cultivars under salt stress. J Plant Nutr Soil Sci 174:283–291 Talaat NB, Shawky BT (2011) Influence of arbuscular mycorrhizae on yield, nutrients, organic solutes, and antioxidant enzymes of two wheat cultivars under salt stress. J Plant Nutr Soil Sci 174:283–291
Zurück zum Zitat Tang C-S, Young C-C (1982) Collection and identification of allelopathic compounds from the undisturbed root system of bigalta limpograss (Hemarthria altissima). Plant Physiol 69:155–160 Tang C-S, Young C-C (1982) Collection and identification of allelopathic compounds from the undisturbed root system of bigalta limpograss (Hemarthria altissima). Plant Physiol 69:155–160
Zurück zum Zitat Tang C, Zeng SJ, Qiao YF, Wang GH, Han XZ (2006) Interactions between high pH and iron supply on nodulation and iron nutrition of Lupins albus L. genotypes differing in sensitivity to iron deficiency. Plant Soil 279:153–162 Tang C, Zeng SJ, Qiao YF, Wang GH, Han XZ (2006) Interactions between high pH and iron supply on nodulation and iron nutrition of Lupins albus L. genotypes differing in sensitivity to iron deficiency. Plant Soil 279:153–162
Zurück zum Zitat Theng BKG, Tate KR, Sollins P (1989) Constituents of organic matter in temperate and tropical soils. In: Coleman DC, Oades JM, Uehara G (eds) Dynamics of soil organic matter in tropical ecosystems. NifTAL Project, Dept of Agronomy and Soil Science, College of Tropical Agronomy and Human Resources, University of Hawaii, pp 5–32 Theng BKG, Tate KR, Sollins P (1989) Constituents of organic matter in temperate and tropical soils. In: Coleman DC, Oades JM, Uehara G (eds) Dynamics of soil organic matter in tropical ecosystems. NifTAL Project, Dept of Agronomy and Soil Science, College of Tropical Agronomy and Human Resources, University of Hawaii, pp 5–32
Zurück zum Zitat Thijs H, Shann JR, Weidenhamer JD (1994) The effects of phytotoxins on competitive outcome in a model system. Ecology 75:1959–1964 Thijs H, Shann JR, Weidenhamer JD (1994) The effects of phytotoxins on competitive outcome in a model system. Ecology 75:1959–1964
Zurück zum Zitat Timonen S, Marschner P (2006) Mycorrhizosphere concept. In: Mukerji KG, Manoharachary C, Singh J (eds) Microbial activity in the rhizosphere. Springer-Verlag Berlin, Heidelberg, pp 155–172 Timonen S, Marschner P (2006) Mycorrhizosphere concept. In: Mukerji KG, Manoharachary C, Singh J (eds) Microbial activity in the rhizosphere. Springer-Verlag Berlin, Heidelberg, pp 155–172
Zurück zum Zitat Torsvik V, Goksøyr J, Daae FL (1990) High diversity in DNA of soil bacteria. Appl Environ Microbiol 56:782–787 Torsvik V, Goksøyr J, Daae FL (1990) High diversity in DNA of soil bacteria. Appl Environ Microbiol 56:782–787
Zurück zum Zitat Tracey T-WM, Griffiths RI, Whiteley AS, Prosser JI, Baily MJ (2007) Detection of active bacterial populations in soil. In: van Elsas JD, Jansson JK, Trevors JT (eds) Modern soil microbiology, 2nd edn. CRC Press, Boca Raton, pp 387–408 Tracey T-WM, Griffiths RI, Whiteley AS, Prosser JI, Baily MJ (2007) Detection of active bacterial populations in soil. In: van Elsas JD, Jansson JK, Trevors JT (eds) Modern soil microbiology, 2nd edn. CRC Press, Boca Raton, pp 387–408
Zurück zum Zitat Tungate KD, Israel DW, Watson DM, Rufty TW (2007) Potential changes in weed competitiveness in an agroecological system with elevated temperature. Environ Exp Bot 60:42–49 Tungate KD, Israel DW, Watson DM, Rufty TW (2007) Potential changes in weed competitiveness in an agroecological system with elevated temperature. Environ Exp Bot 60:42–49
Zurück zum Zitat Ultra VUY Jr, Tanaka S, Sakurai K, Iwasaki K (2007) Arbuscular mycorrhizal fungus (Glomus aggregatum) influences biotransformation of arsenic in the rhizosphere of sunflower (Helianthus annuus L.). Soil Sci Plant Nutr 53:499–508 Ultra VUY Jr, Tanaka S, Sakurai K, Iwasaki K (2007) Arbuscular mycorrhizal fungus (Glomus aggregatum) influences biotransformation of arsenic in the rhizosphere of sunflower (Helianthus annuus L.). Soil Sci Plant Nutr 53:499–508
Zurück zum Zitat Van der Werf H, Genouw G, Van Vooren L, Verstraete W (1995) The determination of active microbial biomass by the respiration simulation method. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, pp 405–408 Van der Werf H, Genouw G, Van Vooren L, Verstraete W (1995) The determination of active microbial biomass by the respiration simulation method. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, pp 405–408
Zurück zum Zitat Van Elsas JD, Janson JK, Trevors JT (2007) Modern soil microbiology, 2nd edn. CRC Press, Boca Raton Van Elsas JD, Janson JK, Trevors JT (2007) Modern soil microbiology, 2nd edn. CRC Press, Boca Raton
Zurück zum Zitat Wallenstein MD, Weintraub MN (2008) Emerging tools for measuring and modeling the in situ activity of soil extracellular enzymes. Soil Biol Biochem 40:2098–2106 Wallenstein MD, Weintraub MN (2008) Emerging tools for measuring and modeling the in situ activity of soil extracellular enzymes. Soil Biol Biochem 40:2098–2106
Zurück zum Zitat Wallenstein MD, Hess AM, Lewis MR, Steltzer H, Ayres E (2010) Decomposition of aspen leaf litter results in unique metabolomes when decomposed under different tree species. Soil Bio Biochem 42:484–490 Wallenstein MD, Hess AM, Lewis MR, Steltzer H, Ayres E (2010) Decomposition of aspen leaf litter results in unique metabolomes when decomposed under different tree species. Soil Bio Biochem 42:484–490
Zurück zum Zitat Wang B, Qui Y-L (2006) Phylogenetic distribution and evolution of mycorrhizae in land plants. Mycorrhiza 16:299–636 Wang B, Qui Y-L (2006) Phylogenetic distribution and evolution of mycorrhizae in land plants. Mycorrhiza 16:299–636
Zurück zum Zitat Wang Y, Wu F, Liu S (2009) Allelopathic effects of root exudates from wheat, oat and soybean on seed germination and growth of cucumber. Allelopath J 24:103–112 Wang Y, Wu F, Liu S (2009) Allelopathic effects of root exudates from wheat, oat and soybean on seed germination and growth of cucumber. Allelopath J 24:103–112
Zurück zum Zitat Wardle DA, Yeates GW, Barker GM, Bonner KI (2006) The influence of plant litter on decomposer abundance and diversity. Soil Biol Biochem 38:1052–1062 Wardle DA, Yeates GW, Barker GM, Bonner KI (2006) The influence of plant litter on decomposer abundance and diversity. Soil Biol Biochem 38:1052–1062
Zurück zum Zitat Waters ER, Blum U (1987) The effects of single and multiple exposures of ferulic acid on the vegetative and reproductive growth of Phaseolus vulgaris BBL-290. Am J Bot 74:1635–1645 Waters ER, Blum U (1987) The effects of single and multiple exposures of ferulic acid on the vegetative and reproductive growth of Phaseolus vulgaris BBL-290. Am J Bot 74:1635–1645
Zurück zum Zitat Weidenhamer JD (2008) Allelopathic mechanisms and experimental methodology. In: Zeng RS, Mallik AU, Luo SM (eds) Allelopathy in sustainable agriculture and forestry. Springer Business and Science Media, New York, pp 119–135 Weidenhamer JD (2008) Allelopathic mechanisms and experimental methodology. In: Zeng RS, Mallik AU, Luo SM (eds) Allelopathy in sustainable agriculture and forestry. Springer Business and Science Media, New York, pp 119–135
Zurück zum Zitat Weidenhamer JD, Morton TC, Romeo JT (1987) Solution volume and seed number—often overlooked factors in allelopathic bioassays. J Chem Ecol 13:1481–1491 Weidenhamer JD, Morton TC, Romeo JT (1987) Solution volume and seed number—often overlooked factors in allelopathic bioassays. J Chem Ecol 13:1481–1491
Zurück zum Zitat Weidenhamer JD, Hartnett DC, Romeo JT (1989) Density-dependent phytotoxicity: distinguishing resource competition and allelopathic interference in plants. J Appl Ecol 26:613–624 Weidenhamer JD, Hartnett DC, Romeo JT (1989) Density-dependent phytotoxicity: distinguishing resource competition and allelopathic interference in plants. J Appl Ecol 26:613–624
Zurück zum Zitat Weidenhamer JD, Menelaou M, Macias FA, Fisher NH, Richardson DR, Williamson GB (1994) Allelopathic potential of menthofuran monoterpenes from Calamintha ashei. J Chem Ecol 20:3345–3359 Weidenhamer JD, Menelaou M, Macias FA, Fisher NH, Richardson DR, Williamson GB (1994) Allelopathic potential of menthofuran monoterpenes from Calamintha ashei. J Chem Ecol 20:3345–3359
Zurück zum Zitat Weidenhamer JD, Boes PD, Wilcox DS (2009) Solid-phase root zone extraction (SPRE): a new methodology for measurement of allelochemical dynamics in soil. Plant Soil 322:177–186 Weidenhamer JD, Boes PD, Wilcox DS (2009) Solid-phase root zone extraction (SPRE): a new methodology for measurement of allelochemical dynamics in soil. Plant Soil 322:177–186
Zurück zum Zitat Whipps JM, Lynch JM (1986) The influence of the rhizosphere on crop productivity. Adv Microb Ecol 9:187–244 Whipps JM, Lynch JM (1986) The influence of the rhizosphere on crop productivity. Adv Microb Ecol 9:187–244
Zurück zum Zitat Whitehead DC, Dibb H, Hartley RD (1981) Extractant pH and the release of phenolic compounds from soils, plant roots and leaf litter. Soil Biol Biochem 13:343–348 Whitehead DC, Dibb H, Hartley RD (1981) Extractant pH and the release of phenolic compounds from soils, plant roots and leaf litter. Soil Biol Biochem 13:343–348
Zurück zum Zitat Whitehead DC, Dibb H, Hartley RD (1982) Phenolic compounds in soil as influenced by the growth of different plant species. J Appl Ecol 19:579–588 Whitehead DC, Dibb H, Hartley RD (1982) Phenolic compounds in soil as influenced by the growth of different plant species. J Appl Ecol 19:579–588
Zurück zum Zitat Whitehead DC, Dibb H, Hartley RD (1983) Bound phenolic compounds in water extracts of soils, plant roots and leaf litter. Soil Biol Biochem 15:133–136 Whitehead DC, Dibb H, Hartley RD (1983) Bound phenolic compounds in water extracts of soils, plant roots and leaf litter. Soil Biol Biochem 15:133–136
Zurück zum Zitat Whitman WB, Coleman DC, Wiebe WJ (1998) Prokaryotes: the unseen majority. Proc Natl Acad Sci U S A 95:6578–6583 Whitman WB, Coleman DC, Wiebe WJ (1998) Prokaryotes: the unseen majority. Proc Natl Acad Sci U S A 95:6578–6583
Zurück zum Zitat Williams RD, Hoagland RE (1982) The effects of naturally occurring phenolic compounds on seed germination. Weed Scie 30:206–212 Williams RD, Hoagland RE (1982) The effects of naturally occurring phenolic compounds on seed germination. Weed Scie 30:206–212
Zurück zum Zitat Wilson RE, Rice EL (1968) Allelopathy as expressed by Helinathus annuus and its role in old-field succession. Bull Torrey Bot Club 95:432–448 Wilson RE, Rice EL (1968) Allelopathy as expressed by Helinathus annuus and its role in old-field succession. Bull Torrey Bot Club 95:432–448
Zurück zum Zitat Winkle ME, Leavitt JRC, Burnside OC (1981) Effects of weed density on herbicide absorption and bioactivity. Weed Sci 29:405–409 Winkle ME, Leavitt JRC, Burnside OC (1981) Effects of weed density on herbicide absorption and bioactivity. Weed Sci 29:405–409
Zurück zum Zitat Wollum AG (1998) Introduction and historical perspective. In: Sylvia DM, Furhmann JJ, Hartel PG, Zuberer DA (eds) Principles and applications of soil microbiology. Prentice Hall Inc, New Jersey, pp 3–20 Wollum AG (1998) Introduction and historical perspective. In: Sylvia DM, Furhmann JJ, Hartel PG, Zuberer DA (eds) Principles and applications of soil microbiology. Prentice Hall Inc, New Jersey, pp 3–20
Zurück zum Zitat Xi Y, de Ropp JS, Viant MR, Woodruff DL, Yu P (2008) Improved identification of metabolite in complex mixtures using HSQC NMR spectroscopy. Anal Chim Acta 614:127–133 Xi Y, de Ropp JS, Viant MR, Woodruff DL, Yu P (2008) Improved identification of metabolite in complex mixtures using HSQC NMR spectroscopy. Anal Chim Acta 614:127–133
Zurück zum Zitat Xu J (2006) Microbial ecology in the ages of genomics and metagenomics: concepts, tools and recent advances. Mol Ecol 15:1713–1731 Xu J (2006) Microbial ecology in the ages of genomics and metagenomics: concepts, tools and recent advances. Mol Ecol 15:1713–1731
Zurück zum Zitat Xu M, Galhano R, Wiemann P, Bueno E, Tiernan M, Wu W, Chung I-M, Gershenzon J, Tudzynski B, Sesma A, Peters RJ (2012) Genetic evidence for natural product-mediated plant-plant allelopathy in rice (Oryza sativa). New Phytol 193:570–575 Xu M, Galhano R, Wiemann P, Bueno E, Tiernan M, Wu W, Chung I-M, Gershenzon J, Tudzynski B, Sesma A, Peters RJ (2012) Genetic evidence for natural product-mediated plant-plant allelopathy in rice (Oryza sativa). New Phytol 193:570–575
Zurück zum Zitat Yeates GW (2003) Nematodes as soil indicators: functional and biodiversity aspects. Biol Fertil Soils 37:199–210 Yeates GW (2003) Nematodes as soil indicators: functional and biodiversity aspects. Biol Fertil Soils 37:199–210
Zurück zum Zitat Yeates GW, Bongers T (1999) Nematode diversity in agroecosystems. Agric Ecosystem Environ 74:113–135 Yeates GW, Bongers T (1999) Nematode diversity in agroecosystems. Agric Ecosystem Environ 74:113–135
Zurück zum Zitat Zahran HH (1999) Rhizobium-legume symbiosis and nitrogen fixation under severe conditions and in arid climate. Microbiol Mol Biol Rev 63:968–989 Zahran HH (1999) Rhizobium-legume symbiosis and nitrogen fixation under severe conditions and in arid climate. Microbiol Mol Biol Rev 63:968–989
Zurück zum Zitat Zhang L, Xu Z (2008) Assessing bacterial diversity in soil. A brief review. J Soils Sediments 8:379–388 Zhang L, Xu Z (2008) Assessing bacterial diversity in soil. A brief review. J Soils Sediments 8:379–388
Zurück zum Zitat Zhang Z-Y, Pan L-P, Li H-H (2009) Isolation, identification and characterization of soil microbes which degrade phenolic allelochemicals. J Appl Microbiol 108:1839–1849 Zhang Z-Y, Pan L-P, Li H-H (2009) Isolation, identification and characterization of soil microbes which degrade phenolic allelochemicals. J Appl Microbiol 108:1839–1849
Metadaten
Titel
Some Issues and Challenges When Designing Laboratory Bioassays
verfasst von
Udo Blum
Copyright-Jahr
2014
DOI
https://doi.org/10.1007/978-3-319-04732-4_3

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