Skip to main content

2017 | OriginalPaper | Buchkapitel

Topographic Regularity for Tract Filtering in Brain Connectivity

verfasst von : Junyan Wang, Dogu Baran Aydogan, Rohit Varma, Arthur W. Toga, Yonggang Shi

Erschienen in: Information Processing in Medical Imaging

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

The preservation of the spatial relationships among axonal pathways has long been studied and known to be critical for many functions of the brain. Being a fundamental property of the brain connections, there is an intuitive understanding of topographic regularity in neuroscience but yet to be systematically explored in connectome imaging research. In this work, we propose a general mathematical model for topographic regularity of fiber bundles that is consistent with its neuroanatomical understanding. Our model is based on a novel group spectral graph analysis (GSGA) framework motivated by spectral graph theory and tensor decomposition. GSGA provides a common set of eigenvectors for the graphs formed by topographic proximity measures whose preservation along individual tracts in return is modeled as topographic regularity. To demonstrate the application of this novel measure of topographic regularity, we apply it to filter fiber tracts from connectome imaging. Using large-scale data from the Human Connectome Project (HCP), we show that our novel algorithm can achieve better performance than existing methods on the filtering of both individual bundles and whole brain tractograms.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
1.
Zurück zum Zitat Bullmore, E.T., Bassett, D.S.: Brain graphs: graphical models of the human brain connectome. Annu. Rev. Clin. Psychol. 7(1), 113–140 (2011)CrossRef Bullmore, E.T., Bassett, D.S.: Brain graphs: graphical models of the human brain connectome. Annu. Rev. Clin. Psychol. 7(1), 113–140 (2011)CrossRef
2.
Zurück zum Zitat Thomas, C., Ye, F.Q., Irfanoglu, M.O., Modi, P., Saleem, K.S., Leopold, D.A., Pierpaoli, C.: Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited. Proc. Nat. Acad. Sci. 111(46), 16574–16579 (2014)CrossRef Thomas, C., Ye, F.Q., Irfanoglu, M.O., Modi, P., Saleem, K.S., Leopold, D.A., Pierpaoli, C.: Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited. Proc. Nat. Acad. Sci. 111(46), 16574–16579 (2014)CrossRef
3.
Zurück zum Zitat O’Donnell, L.J., Westin, C.F.: Automatic tractography segmentation using a high-dimensional white matter atlas. IEEE Trans. Med. Imaging 26(11), 1562–1575 (2007)CrossRef O’Donnell, L.J., Westin, C.F.: Automatic tractography segmentation using a high-dimensional white matter atlas. IEEE Trans. Med. Imaging 26(11), 1562–1575 (2007)CrossRef
4.
Zurück zum Zitat Aydogan, D.B., Shi, Y.: Track filtering via iterative correction of TDI topology. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9349, pp. 20–27. Springer, Cham (2015). doi:10.1007/978-3-319-24553-9_3 CrossRef Aydogan, D.B., Shi, Y.: Track filtering via iterative correction of TDI topology. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9349, pp. 20–27. Springer, Cham (2015). doi:10.​1007/​978-3-319-24553-9_​3 CrossRef
5.
Zurück zum Zitat Patel, G.H., Kaplan, D.M., Snyder, L.H.: Topographic organization in the brain: searching for general principles. Trends Cogn. Sci. 18(7), 351–363 (2014)CrossRef Patel, G.H., Kaplan, D.M., Snyder, L.H.: Topographic organization in the brain: searching for general principles. Trends Cogn. Sci. 18(7), 351–363 (2014)CrossRef
6.
Zurück zum Zitat Engel, S.A., Glover, G.H., Wandell, B.A.: Retinotopic organization in human visual cortex and the spatial precision of functional MRI. Cereb. Cortex 7(2), 181–192 (1997)CrossRef Engel, S.A., Glover, G.H., Wandell, B.A.: Retinotopic organization in human visual cortex and the spatial precision of functional MRI. Cereb. Cortex 7(2), 181–192 (1997)CrossRef
7.
Zurück zum Zitat Ebeling, U., Reulen, H.J.: Neurosurgical topography of the optic radiation in the temporal lobe. Acta Neurochir. 92(1), 29–36 (1988)CrossRef Ebeling, U., Reulen, H.J.: Neurosurgical topography of the optic radiation in the temporal lobe. Acta Neurochir. 92(1), 29–36 (1988)CrossRef
8.
Zurück zum Zitat Ruben, J., Schwiemann, J., Deuchert, M., Meyer, R., Krause, T., Curio, G., Villringer, K., Kurth, R., Villringer, A.: Somatotopic organization of human secondary somatosensory cortex. Cereb. Cortex 11(5), 463–473 (2001)CrossRef Ruben, J., Schwiemann, J., Deuchert, M., Meyer, R., Krause, T., Curio, G., Villringer, K., Kurth, R., Villringer, A.: Somatotopic organization of human secondary somatosensory cortex. Cereb. Cortex 11(5), 463–473 (2001)CrossRef
9.
Zurück zum Zitat Morosan, P., Rademacher, J., Schleicher, A., Amunts, K., Schormann, T., Zilles, K.: Human primary auditory cortex: cytoarchitectonic subdivisions and mapping into a spatial reference system. NeuroImage 13(4), 684–701 (2001)CrossRef Morosan, P., Rademacher, J., Schleicher, A., Amunts, K., Schormann, T., Zilles, K.: Human primary auditory cortex: cytoarchitectonic subdivisions and mapping into a spatial reference system. NeuroImage 13(4), 684–701 (2001)CrossRef
10.
Zurück zum Zitat Lehman, J.F., Greenberg, B.D., McIntyre, C.C., Rasmussen, S.A., Haber, S.N.: Rules ventral prefrontal cortical axons use to reach their targets: implications for diffusion tensor imaging tractography and deep brain stimulation for psychiatric illness. J. Neurosci. 31(28), 10392–10402 (2011)CrossRef Lehman, J.F., Greenberg, B.D., McIntyre, C.C., Rasmussen, S.A., Haber, S.N.: Rules ventral prefrontal cortical axons use to reach their targets: implications for diffusion tensor imaging tractography and deep brain stimulation for psychiatric illness. J. Neurosci. 31(28), 10392–10402 (2011)CrossRef
11.
Zurück zum Zitat Wedeen, V.J., Rosene, D.L., Wang, R., Dai, G., Mortazavi, F., Hagmann, P., Kaas, J.H., Tseng, W.Y.I.: The geometric structure of the brain fiber pathways. Science 335(6076), 1628–1634 (2012)CrossRef Wedeen, V.J., Rosene, D.L., Wang, R., Dai, G., Mortazavi, F., Hagmann, P., Kaas, J.H., Tseng, W.Y.I.: The geometric structure of the brain fiber pathways. Science 335(6076), 1628–1634 (2012)CrossRef
12.
Zurück zum Zitat Aydogan, D.B., Shi, Y.: Probabilistic tractography for topographically organized connectomes. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9900, pp. 201–209. Springer, Cham (2016). doi:10.1007/978-3-319-46720-7_24 CrossRef Aydogan, D.B., Shi, Y.: Probabilistic tractography for topographically organized connectomes. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9900, pp. 201–209. Springer, Cham (2016). doi:10.​1007/​978-3-319-46720-7_​24 CrossRef
13.
Zurück zum Zitat Thivierge, J.P., Marcus, G.F.: The topographic brain: from neural connectivity to cognition. Trends Neurosci. 30(6), 251–259 (2007)CrossRef Thivierge, J.P., Marcus, G.F.: The topographic brain: from neural connectivity to cognition. Trends Neurosci. 30(6), 251–259 (2007)CrossRef
14.
Zurück zum Zitat Umeyama, S.: An eigendecomposition approach to weighted graph matching problems. IEEE Trans. Pattern Anal. Mach. Intell. 10(5), 695–703 (1988)CrossRefMATH Umeyama, S.: An eigendecomposition approach to weighted graph matching problems. IEEE Trans. Pattern Anal. Mach. Intell. 10(5), 695–703 (1988)CrossRefMATH
15.
Zurück zum Zitat Brouwer, A.E., Haemers, W.H.: Spectra of Graphs. Springer Science & Business Media, Heidelberg (2011)MATH Brouwer, A.E., Haemers, W.H.: Spectra of Graphs. Springer Science & Business Media, Heidelberg (2011)MATH
16.
Zurück zum Zitat Kruskal, J.B.: Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis. Psychometrika 29(1), 1–27 (1964)MathSciNetCrossRefMATH Kruskal, J.B.: Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis. Psychometrika 29(1), 1–27 (1964)MathSciNetCrossRefMATH
17.
Zurück zum Zitat Shi, J., Malik, J.: Normalized cuts and image segmentation. IEEE Trans. Pattern Anal. Mach. Intell. 22(8), 888–905 (2000)CrossRef Shi, J., Malik, J.: Normalized cuts and image segmentation. IEEE Trans. Pattern Anal. Mach. Intell. 22(8), 888–905 (2000)CrossRef
18.
Zurück zum Zitat Bunse-Gerstner, A., Byers, R., Mehrmann, V.: Numerical methods for simultaneous diagonalization. SIAM J. Matrix Anal. Appl. 14(4), 927–949 (1993)MathSciNetCrossRefMATH Bunse-Gerstner, A., Byers, R., Mehrmann, V.: Numerical methods for simultaneous diagonalization. SIAM J. Matrix Anal. Appl. 14(4), 927–949 (1993)MathSciNetCrossRefMATH
19.
20.
Zurück zum Zitat Essen, D.V., Ugurbil, K., et al.: The Human Connectome Project: a data acquisition perspective. NeuroImage 62(4), 2222–2231 (2012)CrossRef Essen, D.V., Ugurbil, K., et al.: The Human Connectome Project: a data acquisition perspective. NeuroImage 62(4), 2222–2231 (2012)CrossRef
21.
Zurück zum Zitat Tran, G., Shi, Y.: Fiber orientation and compartment parameter estimation from multi-shell diffusion imaging. IEEE Trans. Med. Imaging 34(11), 2320–2332 (2015)CrossRef Tran, G., Shi, Y.: Fiber orientation and compartment parameter estimation from multi-shell diffusion imaging. IEEE Trans. Med. Imaging 34(11), 2320–2332 (2015)CrossRef
22.
Zurück zum Zitat Tournier, J.D., Calamante, F., Connelly, A.: MRtrix: diffusion tractography in crossing fiber regions. Int. J. Imaging Syst. Technol. 22(1), 53–66 (2012)CrossRef Tournier, J.D., Calamante, F., Connelly, A.: MRtrix: diffusion tractography in crossing fiber regions. Int. J. Imaging Syst. Technol. 22(1), 53–66 (2012)CrossRef
23.
Zurück zum Zitat Kammen, A., Law, M., Tjan, B.S., Toga, A.W., Shi, Y.: Automated retinofugal visual pathway reconstruction with multi-shell HARDI and FOD-based analysis. NeuroImage 125, 767–779 (2016)CrossRef Kammen, A., Law, M., Tjan, B.S., Toga, A.W., Shi, Y.: Automated retinofugal visual pathway reconstruction with multi-shell HARDI and FOD-based analysis. NeuroImage 125, 767–779 (2016)CrossRef
24.
Zurück zum Zitat Smith, R.E., Tournier, J.D., Calamante, F., Connelly, A.: SIFT: spherical-deconvolution informed filtering of tractograms. NeuroImage 67, 298–312 (2013)CrossRef Smith, R.E., Tournier, J.D., Calamante, F., Connelly, A.: SIFT: spherical-deconvolution informed filtering of tractograms. NeuroImage 67, 298–312 (2013)CrossRef
25.
Zurück zum Zitat Benson, N.C., Butt, O.H., Datta, R., Radoeva, P.D., Brainard, D.H., Aguirre, G.K.: The retinotopic organization of striate cortex is well predicted by surface topology. Curr. Biol.: CB 22(21), 2081–2085 (2012)CrossRef Benson, N.C., Butt, O.H., Datta, R., Radoeva, P.D., Brainard, D.H., Aguirre, G.K.: The retinotopic organization of striate cortex is well predicted by surface topology. Curr. Biol.: CB 22(21), 2081–2085 (2012)CrossRef
Metadaten
Titel
Topographic Regularity for Tract Filtering in Brain Connectivity
verfasst von
Junyan Wang
Dogu Baran Aydogan
Rohit Varma
Arthur W. Toga
Yonggang Shi
Copyright-Jahr
2017
DOI
https://doi.org/10.1007/978-3-319-59050-9_21