Skip to main content

2021 | OriginalPaper | Buchkapitel

Towards Semantic Interpretation of Thoracic Disease and COVID-19 Diagnosis Models

verfasst von : Ashkan Khakzar, Sabrina Musatian, Jonas Buchberger, Icxel Valeriano Quiroz, Nikolaus Pinger, Soroosh Baselizadeh, Seong Tae Kim, Nassir Navab

Erschienen in: Medical Image Computing and Computer Assisted Intervention – MICCAI 2021

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Convolutional neural networks are showing promise in the automatic diagnosis of thoracic pathologies on chest x-rays. Their black-box nature has sparked many recent works to explain the prediction via input feature attribution methods (aka saliency methods). However, input feature attribution methods merely identify the importance of input regions for the prediction and lack semantic interpretation of model behavior. In this work, we first identify the semantics associated with internal units (feature maps) of the network. We proceed to investigate the following questions; Does a regression model that is only trained with COVID-19 severity scores implicitly learn visual patterns associated with thoracic pathologies? Does a network that is trained on weakly labeled data (e.g. healthy, unhealthy) implicitly learn pathologies? Moreover, we investigate the effect of pretraining and data imbalance on the interpretability of learned features. In addition to the analysis, we propose semantic attribution to semantically explain each prediction. We present our findings using publicly available chest pathologies (CheXpert [5], NIH ChestX-ray8 [25]) and COVID-19 datasets (BrixIA [20], and COVID-19 chest X-ray segmentation dataset [4]). The Code (https://​github.​com/​CAMP-eXplain-AI/​CheXplain-Dissection) is publicly available.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
1.
Zurück zum Zitat Bach, S., Binder, A., Montavon, G., Klauschen, F., Müller, K.R., Samek, W.: On pixel-wise explanations for non-linear classifier decisions by layer-wise relevance propagation. PLoS ONE 10(7), e0130140 (2015)CrossRef Bach, S., Binder, A., Montavon, G., Klauschen, F., Müller, K.R., Samek, W.: On pixel-wise explanations for non-linear classifier decisions by layer-wise relevance propagation. PLoS ONE 10(7), e0130140 (2015)CrossRef
2.
Zurück zum Zitat Bau, D., Zhou, B., Khosla, A., Oliva, A., Torralba, A.: Network dissection: quantifying interpretability of deep visual representations. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 6541–6549 (2017) Bau, D., Zhou, B., Khosla, A., Oliva, A., Torralba, A.: Network dissection: quantifying interpretability of deep visual representations. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 6541–6549 (2017)
5.
Zurück zum Zitat Irvin, J., et al.: Chexpert: a large chest radiograph dataset with uncertainty labels and expert comparison. In: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 33, pp. 590–597 (2019) Irvin, J., et al.: Chexpert: a large chest radiograph dataset with uncertainty labels and expert comparison. In: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 33, pp. 590–597 (2019)
6.
Zurück zum Zitat Johnson, A.E., et al.: MIMIC-CXR-JPG, a large publicly available database of labeled chest radiographs. arXiv preprint arXiv:1901.07042 (2019) Johnson, A.E., et al.: MIMIC-CXR-JPG, a large publicly available database of labeled chest radiographs. arXiv preprint arXiv:​1901.​07042 (2019)
7.
Zurück zum Zitat Karim, M., Döhmen, T., Rebholz-Schuhmann, D., Decker, S., Cochez, M., Beyan, O., et al.: Deepcovidexplainer: Explainable covid-19 predictions based on chest x-ray images. arXiv preprint arXiv:2004.04582 (2020) Karim, M., Döhmen, T., Rebholz-Schuhmann, D., Decker, S., Cochez, M., Beyan, O., et al.: Deepcovidexplainer: Explainable covid-19 predictions based on chest x-ray images. arXiv preprint arXiv:​2004.​04582 (2020)
8.
9.
Zurück zum Zitat Khakzar, A., Baselizadeh, S., Khanduja, S., Rupprecht, C., Kim, S.T., Navab, N.: Neural response interpretation through the lens of critical pathways. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (2021) Khakzar, A., Baselizadeh, S., Khanduja, S., Rupprecht, C., Kim, S.T., Navab, N.: Neural response interpretation through the lens of critical pathways. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (2021)
10.
Zurück zum Zitat Khakzar, A., et al.: Explaining COVID-19 and thoracic pathology model predictions by identifying informative input features (2021) Khakzar, A., et al.: Explaining COVID-19 and thoracic pathology model predictions by identifying informative input features (2021)
12.
Zurück zum Zitat Li, Z., et al.: Thoracic disease identification and localization with limited supervision. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 8290–8299 (2018) Li, Z., et al.: Thoracic disease identification and localization with limited supervision. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 8290–8299 (2018)
13.
Zurück zum Zitat Nguyen, A., Dosovitskiy, A., Yosinski, J., Brox, T., Clune, J.: Synthesizing the preferred inputs for neurons in neural networks via deep generator networks. In: Advances in Neural Information Processing Systems, pp. 3387–3395 (2016) Nguyen, A., Dosovitskiy, A., Yosinski, J., Brox, T., Clune, J.: Synthesizing the preferred inputs for neurons in neural networks via deep generator networks. In: Advances in Neural Information Processing Systems, pp. 3387–3395 (2016)
14.
Zurück zum Zitat Oh, Y., Park, S., Ye, J.C.: Deep learning COVID-19 features on CXR using limited training data sets. IEEE Trans. Med. Imaging 39(8), 2688–2700 (2020)CrossRef Oh, Y., Park, S., Ye, J.C.: Deep learning COVID-19 features on CXR using limited training data sets. IEEE Trans. Med. Imaging 39(8), 2688–2700 (2020)CrossRef
17.
Zurück zum Zitat Rajpurkar, P., et al.: Chexnet: radiologist-level pneumonia detection on chest x-rays with deep learning. arXiv preprint arXiv:1711.05225 (2017) Rajpurkar, P., et al.: Chexnet: radiologist-level pneumonia detection on chest x-rays with deep learning. arXiv preprint arXiv:​1711.​05225 (2017)
18.
Zurück zum Zitat Selvaraju, R.R., Cogswell, M., Das, A., Vedantam, R., Parikh, D., Batra, D.: Grad-CAM: visual explanations from deep networks via gradient-based localization. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 618–626 (2017) Selvaraju, R.R., Cogswell, M., Das, A., Vedantam, R., Parikh, D., Batra, D.: Grad-CAM: visual explanations from deep networks via gradient-based localization. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 618–626 (2017)
19.
20.
Zurück zum Zitat Signoroni, A., et al.: End-to-end learning for semiquantitative rating of COVID-19 severity on chest X-rays. arXiv preprint arXiv:2006.04603 (2020) Signoroni, A., et al.: End-to-end learning for semiquantitative rating of COVID-19 severity on chest X-rays. arXiv preprint arXiv:​2006.​04603 (2020)
21.
Zurück zum Zitat Simonyan, K., Vedaldi, A., Zisserman, A.: Deep inside convolutional networks: Visualising image classification models and saliency maps. arXiv preprint arXiv:1312.6034 (2013) Simonyan, K., Vedaldi, A., Zisserman, A.: Deep inside convolutional networks: Visualising image classification models and saliency maps. arXiv preprint arXiv:​1312.​6034 (2013)
22.
Zurück zum Zitat Sundararajan, M., Najmi, A.: The many Shapley values for model explanation. In: 37th International Conference on Machine Learning, ICML 2020 (2020) Sundararajan, M., Najmi, A.: The many Shapley values for model explanation. In: 37th International Conference on Machine Learning, ICML 2020 (2020)
23.
Zurück zum Zitat Sundararajan, M., Taly, A., Yan, Q.: Axiomatic attribution for deep networks. In: International Conference on Machine Learning, pp. 3319–3328. PMLR (2017) Sundararajan, M., Taly, A., Yan, Q.: Axiomatic attribution for deep networks. In: International Conference on Machine Learning, pp. 3319–3328. PMLR (2017)
25.
Zurück zum Zitat Wang, X., Peng, Y., Lu, L., Lu, Z., Bagheri, M., Summers, R.M.: Chestx-ray8: Hospital-scale chest X-ray database and benchmarks on weakly-supervised classification and localization of common thorax diseases. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 2097–2106 (2017) Wang, X., Peng, Y., Lu, L., Lu, Z., Bagheri, M., Summers, R.M.: Chestx-ray8: Hospital-scale chest X-ray database and benchmarks on weakly-supervised classification and localization of common thorax diseases. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 2097–2106 (2017)
26.
Zurück zum Zitat Wu, J., et al.: Deepminer: discovering interpretable representations for mammogram classification and explanation. arXiv preprint arXiv:1805.12323 (2018) Wu, J., et al.: Deepminer: discovering interpretable representations for mammogram classification and explanation. arXiv preprint arXiv:​1805.​12323 (2018)
Metadaten
Titel
Towards Semantic Interpretation of Thoracic Disease and COVID-19 Diagnosis Models
verfasst von
Ashkan Khakzar
Sabrina Musatian
Jonas Buchberger
Icxel Valeriano Quiroz
Nikolaus Pinger
Soroosh Baselizadeh
Seong Tae Kim
Nassir Navab
Copyright-Jahr
2021
DOI
https://doi.org/10.1007/978-3-030-87199-4_47