nach oben

Cluster Computing

Erschienen in:

01.09.2015

A network approach for managing and processing big cancer data in clouds

verfasst von: Wei Xing, Wei Jie, Dimitrios Tsoumakos, Moustafa Ghanem

Erschienen in: Cluster Computing | Ausgabe 3/2015

Einloggen

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config

KI-gestützte Suche

Aus

Abstract

Translational cancer research requires integrative analysis of multiple levels of big cancer data to identify and treat cancer. In order to address the issues that data is decentralised, growing and continually being updated, and the content living or archiving on different information sources partially overlaps creating redundancies as well as contradictions and inconsistencies, we develop a data network model and technology for constructing and managing big cancer data. To support our data network approach for data process and analysis, we employ a semantic content network approach and adopt the CELAR cloud platform. The prototype implementation shows that the CELAR cloud can satisfy the on-demanding needs of various data resources for management and process of big cancer data.

Vorheriger Artikel An intelligent clustering scheme for distributed intrusion detection in vehicular cloud computing

Nächster Artikel Robot and cloud-assisted multi-modal healthcare system

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

über 102.000 Bücher
über 537 Zeitschriften

aus folgenden Fachgebieten:

Automobil + Motoren
Bauwesen + Immobilien
Business IT + Informatik
Elektrotechnik + Elektronik
Energie + Nachhaltigkeit
Finance + Banking
Management + Führung
Marketing + Vertrieb
Maschinenbau + Werkstoffe
Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Jetzt informieren

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

über 67.000 Bücher
über 390 Zeitschriften

aus folgenden Fachgebieten:

Automobil + Motoren
Bauwesen + Immobilien
Business IT + Informatik
Elektrotechnik + Elektronik
Energie + Nachhaltigkeit
Maschinenbau + Werkstoffe

Jetzt Wissensvorsprung sichern!

Jetzt informieren

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

über 67.000 Bücher
über 340 Zeitschriften

aus folgenden Fachgebieten:

Bauwesen + Immobilien
Business IT + Informatik
Finance + Banking
Management + Führung
Marketing + Vertrieb
Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Jetzt informieren

Lawrence, M., Stojanov, P., Mermel, C., Robinson, J., Garraway, L., Golub, T., Meyerson, M., Gabriel, S., Lander, E., Getz, G.: Discovery and saturation analysis of cancer genes across 21 tumour types. Nature 505(5), 495–501 (2014)CrossRef

Chen, R., Mias, G., Li-Pook-Than, J., Jiang, L., Lam, H., Chen, R., Miriami, E., Karczewski, K., Hariharan, M., Dewey, F., Cheng, Y., Clark, M., Im, H., Habegger, L., Balasubramanian, S., O’Huallachain, M., Dudley, J., Hillenmeyer, S., Haraksingh, R., Sharon, D., Euskirchen, G., Lacroute, P., Bettinger, K., Boyle, A., Kasowski, M., Grubert, F., Seki, S., Garcia, M., Whirl-Carrillo, M., Gallardo, M., Blasco, M., Greenberg, P., Snyder, P., Klein, T., Altman, R., Butte, A.J., Ashley, E., Gerstein, M., Nadeau, K., Tang, H., Snyder, M.: Personal omics profiling reveals dynamic molecular and medical phenotypes. Cell 148(6), 1293–1307 (2012)CrossRef

Hanahan, D., Weinberg, R.: Hallmarks of cancer: the next generation. Cell 144(5), 646–674 (2011)CrossRef

Weinberg, R.A.: Coming full circlefrom endless complexity to simplicity and back again. Cell 157(1), 267–271 (2014)MathSciNetCrossRef

Giannakopoulos, I., Papailiou, N., Mantas, C., Konstantinou, I., Tsoumakos, D., Koziris, N.: CELAR: Automated Application Elasticity Platform. IEEE International Conference on Big Data (2014)

Copil, G., Moldovan, D., Le, D.-H., Truong, H.-L., Dustdar, S., Sofokleous, C., Loulloudes, N., Trihinas, D., Pallis, G., Dikaiakos, M.D., Sheridan, C., Floros, E., Loverdos, C.K., Star, K., Xing, W.: On controlling elasticity of cloud applications in celar. In: Emerging Research in Cloud Distributed Computing Systems. Software Engineering, and High Performance Computing Book Series, Advances in Systems Analysis (2015)

Xing, W., Corcho, O., Goble, C., Dikaiakos, M.D.: An ActOn-based semantic information service for Grids. J. Future Gener. Comput. Syst. 26(3), March (2010)

Xing, W., Corcho, O., Goble, C., Dikaiakos, M.: Active ontology: an information integration approach for highly dynamic information sources. In: European Semantic Web Conference. Innsbruck, Austria (2007)

Wang, L., Khan, S.U., Chen, D., Kolodziej, J., Ranjan, R., Xu, C., Zomaya, A.Y.: Energy-aware parallel task scheduling in a cluster. Future Gener. Comput. Syst. 29(7), 1661–1670 (2013)CrossRef

10.

Wang, L., Kunze, M., Tao, J., von Laszewski, G.: Towards building a cloud for scientific applications. Adv. Eng. Softw. 42(9), September (2011)

11.

Wang, L., Chen, D., Hu, Y., Ma, Y., Wang, J.: Towards enabling cyberinfrastructure as a service in clouds. Comput. Electr. Eng. 39(1), 3–14 (2013)CrossRef

12.

Xing, W., Liabotis, I., Tsoumakos, D., Sofokleous, S., Floros, V., Loverdos, C.: Translational cancer detection pipeline design (v1.0). Tech. Rep, EU CELAR Project (March 2013)

13.

EMBL-EBI Services. http://www.ebi.ac.uk/services

14.

Rebholz-Schuhmann, D., Kirsch, H., Gaudan, S., Arregui, M., Nenadic, G.: Annotation and disambiguation of semantic types in biomedical text: a cascaded approach to named entity recognition. In: Proceedings of the EACL Workshop on Multi-Dimensional Markup in NLP, Trente, Italy (2006)

15.

del Castillo, J.C.: Bioalma’s text mining solutions for biomedical research. ALMA Bioinformatics, S.L. (2002)

16.

Fernandez, J., Hoffmann, R., Valencia, A.: iHOP web services family. In: Freitas, A., Navarro, A. (eds.) Bioinformatics for Personalized Medicine, ser. Lecture Notes in Computer Science, vol. 6620, pp. 102–107 (2012)

17.

EMBL-EBI Databases. http://www.ebi.ac.uk/services/dna-rna

18.

Zdobnov, E.M., Lopez, R., Apweiler, R., Etzold, T.: The EBI SRS server recent developments. Bioinformatics 18(2), 368–373 (2002)CrossRef

19.

Hekkelman, H.L., Vriend, G.: MRS: a fast and compact retrieval system for biological data. Nucl. Acids Res. 33(Web-Server-Issue), 766–769, 2005

20.

Xiong, P., Chi, Y., Zhu, S., Moon, H.J., Pu, C., Hacigumus, H.: Intelligent management of virtualized resources for database systems in cloud environment. In: IEEE 27th International Conference on Data Engineering, pp. 87–98, April (2011)

21.

Wang, L., von Laszewski, G., Dayal, J., He, X., Younge, A.J., Furlani, T.R.: Towards thermal aware workload scheduling in a data center. In: Proceedings of the 10th International Symposium on Pervasive Systems, Algorithms, and Networks, pp. 116–122, December (2009)

22.

Wang, L., von Laszewski, G., Younge, A.J., He, X., Kunze, M., Tao, J., Fu, C.: Cloud computing: a perspective study. New Gener. Comput. 28(2), 137–146 (2010)CrossRefMATH

23.

Rao, J., Bu, X., Xu, C.-Z., Wang, K.: A distributed self-learning approach for elastic provisioning of virtualized cloud resources. In: 2011 IEEE 19th International Symposium on Modeling, Analysis Simulation of Computer and Telecommunication Systems, pp. 45–54, July (2011)

24.

Sharma, U., Shenoy, P., Sahu, S., Shaikh, A.: A cost-aware elasticity provisioning system for the cloud. In: 31st International Conference on Distributed Computing Systems, pp. 559–570, June (2011)

25.

Giannakopoulos, I., Papailiou, N., Mantas, C., Konstantinou, I., Tsoumakos, D., Koziris, N.: CELAR: automated application elasticity platform. In: 2014 IEEE International Conference on Big Data, Big Data 2014, pp. 23–25 (2014)

Titel: A network approach for managing and processing big cancer data in clouds
verfasst von: Wei Xing
Wei Jie
Dimitrios Tsoumakos
Moustafa Ghanem
Publikationsdatum: 01.09.2015
Verlag: Springer US
Erschienen in: Cluster Computing / Ausgabe 3/2015
Print ISSN: 1386-7857
Elektronische ISSN: 1573-7543
DOI: https://doi.org/10.1007/s10586-015-0456-6

Springer Professional

Abstract

Bitte loggen Sie sich ein, um Zugang zu Ihrer Lizenz zu erhalten.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Springer Professional "Technik"

Springer Professional "Wirtschaft"

Weitere Artikel der Ausgabe 3/2015

A data parallel approach to modelling and simulation of large crowd

Large scale graph processing systems: survey and an experimental evaluation

The dispatch time aligning I/O scheduling for parallel file systems

Multi-dimensional multiple query scheduling with distributed semantic caching framework

Robot and cloud-assisted multi-modal healthcare system

GRAPPE : a system for determining optimal connecting route to target person based on mutual intimacy index