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2020 | OriginalPaper | Buchkapitel

8. Analytical Protocols in Phycobiliproteins Analysis

verfasst von : Milan R. Nikolic, Simeon Minic, Mirjana Macvanin, Dragana Stanic-Vucinic, Tanja Cirkovic Velickovic

Erschienen in: Pigments from Microalgae Handbook

Verlag: Springer International Publishing

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Abstract

The aim of this chapter is to review and discuss methodology and protocols in the analysis of phycobiliproteins (phycocyanins, allophycocyanins, and phycoerythrins) and their chromophores. Due to the presence of multiple covalently bound open-chain tetrapyrrole chromophores, phycobiliproteins are colored and strongly fluorescent molecules, with high absorption coefficients (105 to 106) and excellent fluorescent quantum yield (0.51 up to 0.98). Therefore, a vast number of methods for phycobiliproteins analysis is based on these spectral characteristics, whereas assessment of their bioactivity is related to their exceptional redox and metal-chelating properties. This chapter is dedicated to methods used for isolation and purification, structure analysis, physicochemical properties and stability characterization, quantification, as well as in vitro and in vivo biological activities evaluation. In addition, emerging approaches related to phycobiliproteins analysis are also reviewed including interactions with other biomolecules and ions and identification of phycobiliprotein (chromo)peptides by mass spectrometry.

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Zurück zum Zitat Kursar, T. A., Vander, M. J., & Alberte, R. S. (1983). Light-harvesting system of the red alga Gracilaria tikvahiae. I Biochemical analysis of pigment mutations. Plant Physiology, 73, 353–360.PubMedPubMedCentral Kursar, T. A., Vander, M. J., & Alberte, R. S. (1983). Light-harvesting system of the red alga Gracilaria tikvahiae. I Biochemical analysis of pigment mutations. Plant Physiology, 73, 353–360.PubMedPubMedCentral
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Zurück zum Zitat Mroginski, M. A., Mark, F., Thiel, W., & Hildebrandt, P. (2007). Quantum mechanics/molecular mechanics calculation of the Raman spectra of the phycocyanobilin chromophore in alpha-c-phycocyanin. Biophysical Journal, 93, 1885–1894.PubMedPubMedCentral Mroginski, M. A., Mark, F., Thiel, W., & Hildebrandt, P. (2007). Quantum mechanics/molecular mechanics calculation of the Raman spectra of the phycocyanobilin chromophore in alpha-c-phycocyanin. Biophysical Journal, 93, 1885–1894.PubMedPubMedCentral
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Zurück zum Zitat Nair, D., Krishna, J. G., Panikkar, M. V. N., Nair, B. G., Pai, J. G., & Nair, S. S. (2018). Identification, purification, biochemical and mass spectrometric characterization of novel phycobiliproteins from a marine red alga, Centroceras clavulatum. International Journal of Biological Macromolecules, 114, 679–691.PubMed Nair, D., Krishna, J. G., Panikkar, M. V. N., Nair, B. G., Pai, J. G., & Nair, S. S. (2018). Identification, purification, biochemical and mass spectrometric characterization of novel phycobiliproteins from a marine red alga, Centroceras clavulatum. International Journal of Biological Macromolecules, 114, 679–691.PubMed
Zurück zum Zitat Nikolova, D., Weber, D., Scholz, M., Bald, T., Scharsack, J. P., & Hippler, M. (2017). Temperature-induced remodeling of the photosynthetic machinery tunes photosynthesis in the thermophilic alga Cyanidioschyzon merolae. Plant Physiology, 174, 35–46.PubMedPubMedCentral Nikolova, D., Weber, D., Scholz, M., Bald, T., Scharsack, J. P., & Hippler, M. (2017). Temperature-induced remodeling of the photosynthetic machinery tunes photosynthesis in the thermophilic alga Cyanidioschyzon merolae. Plant Physiology, 174, 35–46.PubMedPubMedCentral
Zurück zum Zitat Niu, J. F., Wang, G. C., & Tseng, C. K. (2006). Method for large-scale isolation and purification of R-phycoerythrin from red alga Polysiphonia urceolata Grev. Protein Expression and Purification, 49, 23–31.PubMed Niu, J. F., Wang, G. C., & Tseng, C. K. (2006). Method for large-scale isolation and purification of R-phycoerythrin from red alga Polysiphonia urceolata Grev. Protein Expression and Purification, 49, 23–31.PubMed
Zurück zum Zitat Oh, J. H., Kim, E. Y., & Nam, T. J. (2018). Phycoerythrin-derived tryptic peptide of a red Alga Pyropia yezoensis attenuates glutamate-induced ER stress and neuronal senescence in primary rat hippocampal neurons. Molecular Nutrition & Food Research, 62, e1700469. Oh, J. H., Kim, E. Y., & Nam, T. J. (2018). Phycoerythrin-derived tryptic peptide of a red Alga Pyropia yezoensis attenuates glutamate-induced ER stress and neuronal senescence in primary rat hippocampal neurons. Molecular Nutrition & Food Research, 62, e1700469.
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Zurück zum Zitat Pan, Q., Chen, M., Li, J., Wu, Y., Zhen, C., & Liang, B. (2013). Antitumor function and mechanism of phycoerythrin from Porphyra haitanensis. Biological Research, 46, 87–95.PubMed Pan, Q., Chen, M., Li, J., Wu, Y., Zhen, C., & Liang, B. (2013). Antitumor function and mechanism of phycoerythrin from Porphyra haitanensis. Biological Research, 46, 87–95.PubMed
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Zurück zum Zitat Paswan, M. B., Chudasama, M. M., Mitra, M., Bhayani, K., George, B., Chatterjee, S., et al. (2016). Fluorescence quenching property of C-phycocyanin from Spirulina platensis and its binding efficacy with viable cell components. Journal of Fluorescence, 26, 577–583.PubMed Paswan, M. B., Chudasama, M. M., Mitra, M., Bhayani, K., George, B., Chatterjee, S., et al. (2016). Fluorescence quenching property of C-phycocyanin from Spirulina platensis and its binding efficacy with viable cell components. Journal of Fluorescence, 26, 577–583.PubMed
Zurück zum Zitat Pleonsil, P., Soogarun, S., & Suwanwong, Y. (2013). Anti-oxidant activity of holo- and apo-c-phycocyanin and their protective effects on human erythrocytes. International Journal of Biological Macromolecules, 60, 393–398.PubMed Pleonsil, P., Soogarun, S., & Suwanwong, Y. (2013). Anti-oxidant activity of holo- and apo-c-phycocyanin and their protective effects on human erythrocytes. International Journal of Biological Macromolecules, 60, 393–398.PubMed
Zurück zum Zitat Puangploy, P., Oaew, S., & Surareungchai, W. (2015). Development of fluorescent phycocyanin-Cu2+ chemosensor for detection of homocysteine. International Journal of Bioscience, Biochemistry and Bioinformatics, 5, 241–248. Puangploy, P., Oaew, S., & Surareungchai, W. (2015). Development of fluorescent phycocyanin-Cu2+ chemosensor for detection of homocysteine. International Journal of Bioscience, Biochemistry and Bioinformatics, 5, 241–248.
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Zurück zum Zitat Rabier, J., & Vijayalakshmi, M. (1983). Affinity of phycocyanin chromopeptides to histidyl-sepharose gels: A model for histidine-tetrapyrrol-interactions in biliproteins. Zeitschrift für Naturforschung C, 38, 230–236. Rabier, J., & Vijayalakshmi, M. (1983). Affinity of phycocyanin chromopeptides to histidyl-sepharose gels: A model for histidine-tetrapyrrol-interactions in biliproteins. Zeitschrift für Naturforschung C, 38, 230–236.
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Zurück zum Zitat Ravi, M., Tentu, S., Baskar, G., Rohan Prasad, S., Raghavan, S., Jayaprakash, P., et al. (2015). Molecular mechanism of anti-cancer activity of phycocyanin in triple-negative breast cancer cells. BMC Cancer, 15, 768.PubMedPubMedCentral Ravi, M., Tentu, S., Baskar, G., Rohan Prasad, S., Raghavan, S., Jayaprakash, P., et al. (2015). Molecular mechanism of anti-cancer activity of phycocyanin in triple-negative breast cancer cells. BMC Cancer, 15, 768.PubMedPubMedCentral
Zurück zum Zitat Rimbau, V., Camins, A., Romay, C., González, R., & Pallàs, M. (1999). Protective effects of C-phycocyanin against kainic acid-induced neuronal damage in rat hippocampus. Neuroscience Letters, 276, 75–78.PubMed Rimbau, V., Camins, A., Romay, C., González, R., & Pallàs, M. (1999). Protective effects of C-phycocyanin against kainic acid-induced neuronal damage in rat hippocampus. Neuroscience Letters, 276, 75–78.PubMed
Zurück zum Zitat Riss, J., Décordé, K., Sutra, T., Delage, M., Baccou, J. C., Jouy, N., et al. (2007). Phycobiliprotein C-phycocyanin from Spirulina platensis is powerfully responsible for reducing oxidative stress and NADPH oxidase expression induced by an atherogenic diet in hamsters. Journal of Agriculture and Food Chemistry, 55, 7962–7967. Riss, J., Décordé, K., Sutra, T., Delage, M., Baccou, J. C., Jouy, N., et al. (2007). Phycobiliprotein C-phycocyanin from Spirulina platensis is powerfully responsible for reducing oxidative stress and NADPH oxidase expression induced by an atherogenic diet in hamsters. Journal of Agriculture and Food Chemistry, 55, 7962–7967.
Zurück zum Zitat Roda-Serrat, M. C., Christensen, K. V., El-Houri, R. B., Frette, X., & Christensen, L. P. (2018). Fast cleavage of phycocyanobilin from phycocyanin for use in food colouring. Food Chemistry, 240, 655–661.PubMed Roda-Serrat, M. C., Christensen, K. V., El-Houri, R. B., Frette, X., & Christensen, L. P. (2018). Fast cleavage of phycocyanobilin from phycocyanin for use in food colouring. Food Chemistry, 240, 655–661.PubMed
Zurück zum Zitat Sampath-Wiley, P., & Neefus, C. (2007). An improved method for estimating R-phycoerythrin and R-phycocyanin contents from crude aqueous extracts of Porphyra (Bangiales, Rhodophyta). Journal of Applied Phycology, 19, 123–129.PubMed Sampath-Wiley, P., & Neefus, C. (2007). An improved method for estimating R-phycoerythrin and R-phycocyanin contents from crude aqueous extracts of Porphyra (Bangiales, Rhodophyta). Journal of Applied Phycology, 19, 123–129.PubMed
Zurück zum Zitat Sathyasaikumar, K. V., Swapna, I., Reddy, P. V., Murthy, Ch R, Roy, K. R., Dutta Gupta, A., et al. (2007). Co-administration of C-phycocyanin ameliorates thioacetamide-induced hepatic encephalopathy in Wistar rats. Journal of the Neurological Sciences, 252, 67–75.PubMed Sathyasaikumar, K. V., Swapna, I., Reddy, P. V., Murthy, Ch R, Roy, K. R., Dutta Gupta, A., et al. (2007). Co-administration of C-phycocyanin ameliorates thioacetamide-induced hepatic encephalopathy in Wistar rats. Journal of the Neurological Sciences, 252, 67–75.PubMed
Zurück zum Zitat Sepúlveda-Ugarte, J., Brunet, J. E., Matamala, A. R., Martínez-Oyanedel, J., & Bunster, M. (2011). Spectroscopic parameters of phycoerythrobilin and phycourobilin on phycoerythrin from Gracilaria chilensis. Journal of Photochemistry and Photobiology A: Chemistry, 219, 211–216. Sepúlveda-Ugarte, J., Brunet, J. E., Matamala, A. R., Martínez-Oyanedel, J., & Bunster, M. (2011). Spectroscopic parameters of phycoerythrobilin and phycourobilin on phycoerythrin from Gracilaria chilensis. Journal of Photochemistry and Photobiology A: Chemistry, 219, 211–216.
Zurück zum Zitat Sheu, M. J., Hsieh, Y. Y., Lai, C. H., Chang, C. C., & Wu, C. H. (2013). Antihyperlipidemic and antioxidant effects of C-phycocyanin in Golden Syrian hamsters fed with a hypercholesterolemic diet. Journal of Traditional and Complementary Medicine, 3, 41–47.PubMedPubMedCentral Sheu, M. J., Hsieh, Y. Y., Lai, C. H., Chang, C. C., & Wu, C. H. (2013). Antihyperlipidemic and antioxidant effects of C-phycocyanin in Golden Syrian hamsters fed with a hypercholesterolemic diet. Journal of Traditional and Complementary Medicine, 3, 41–47.PubMedPubMedCentral
Zurück zum Zitat Shi, J., Chen, Y., Xu, Y., Ji, D., Chen, C., & Xie, C. (2017). Differential proteomic analysis by iTRAQ reveals the mechanism of Pyropia haitanensis responding to high temperature stress. Scientific Reports, 7, 44734.PubMedPubMedCentral Shi, J., Chen, Y., Xu, Y., Ji, D., Chen, C., & Xie, C. (2017). Differential proteomic analysis by iTRAQ reveals the mechanism of Pyropia haitanensis responding to high temperature stress. Scientific Reports, 7, 44734.PubMedPubMedCentral
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Zurück zum Zitat Sonani, R. R., Singh, N. K., Awasthi, A., Prasad, B., Kumar, J., & Madamwar, D. (2014a). Phycoerythrin extends life span and health span of Caenorhabditis elegans. Age (Dordr), 36, 9717. Sonani, R. R., Singh, N. K., Awasthi, A., Prasad, B., Kumar, J., & Madamwar, D. (2014a). Phycoerythrin extends life span and health span of Caenorhabditis elegans. Age (Dordr), 36, 9717.
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Metadaten
Titel
Analytical Protocols in Phycobiliproteins Analysis
verfasst von
Milan R. Nikolic
Simeon Minic
Mirjana Macvanin
Dragana Stanic-Vucinic
Tanja Cirkovic Velickovic
Copyright-Jahr
2020
DOI
https://doi.org/10.1007/978-3-030-50971-2_8