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2022 | OriginalPaper | Buchkapitel

Comparative Analysis of the Spatial Structure Chloroplasts and Cyanobacteria Photosynthetic Systems I and II Genes

verfasst von : Maria Senashova, Michael Sadovsky

Erschienen in: Bioinformatics and Biomedical Engineering

Verlag: Springer International Publishing

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Abstract

Statistically revealed inner structuredness of bacterial vs. chloroplast phototsynthetic genes is studied. To do it, we analysed the cyanobacterial genes responsible for a light consumption. A sounding difference in the spatial pattern specific for chloroplast photosystem genes, and bacterial photosystem genes is found. Thus, the bacterial genes yield another type of symmetry of the distribution of the genes converted into triplet frequency dictionaries in 63-dimensional Euclidean space of triplets.

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Literatur
1.
Zurück zum Zitat Allen, J.F., de Paula, W.B., Puthiyaveetil, S., Nield, J.: A structural phylogenetic map for chloroplast photosynthesis. Trends Plant Sci. 16(12), 645–655 (2011)CrossRefPubMed Allen, J.F., de Paula, W.B., Puthiyaveetil, S., Nield, J.: A structural phylogenetic map for chloroplast photosynthesis. Trends Plant Sci. 16(12), 645–655 (2011)CrossRefPubMed
2.
Zurück zum Zitat Anderson, J.M., Melis, A.: Localization of different photosystems in separate regions of chloroplast membranes. Proc. Natl. Acad. Sci. 80(3), 745–749 (1983)CrossRefPubMedPubMedCentral Anderson, J.M., Melis, A.: Localization of different photosystems in separate regions of chloroplast membranes. Proc. Natl. Acad. Sci. 80(3), 745–749 (1983)CrossRefPubMedPubMedCentral
3.
Zurück zum Zitat Casella, S., et al.: Dissecting the native architecture and dynamics of cyanobacterial photosynthetic machinery. Mol. Plant 10(11), 1434–1448 (2017)CrossRefPubMed Casella, S., et al.: Dissecting the native architecture and dynamics of cyanobacterial photosynthetic machinery. Mol. Plant 10(11), 1434–1448 (2017)CrossRefPubMed
4.
Zurück zum Zitat Chowdhury, F.A., Trudeau, M.L., Guo, H., Mi, Z.: A photochemical diode artificial photosynthesis system for unassisted high efficiency overall pure water splitting. Nat. Commun. 9(1), 1–9 (2018)CrossRef Chowdhury, F.A., Trudeau, M.L., Guo, H., Mi, Z.: A photochemical diode artificial photosynthesis system for unassisted high efficiency overall pure water splitting. Nat. Commun. 9(1), 1–9 (2018)CrossRef
5.
Zurück zum Zitat Fedotovskaya, V., Sadovsky, M., Kolesnikova, A., Shpagina, T., Putintseva, Y.: Function vs. taxonomy: further reading from fungal mitochondrial atp synthases. In: IWBBIO, pp. 438–444 (2020) Fedotovskaya, V., Sadovsky, M., Kolesnikova, A., Shpagina, T., Putintseva, Y.: Function vs. taxonomy: further reading from fungal mitochondrial atp synthases. In: IWBBIO, pp. 438–444 (2020)
9.
Zurück zum Zitat Gorban, A.N., Zinovyev, A.Y.: Fast and user-friendly non-linear principal manifold learning by method of elastic maps. In: 2015 IEEE International Conference on Data Science and Advanced Analytics, DSAA 2015, Campus des Cordeliers, Paris, France, 19–21 October 2015, pp. 1–9 (2015). https://doi.org/10.1109/DSAA.2015.7344818 Gorban, A.N., Zinovyev, A.Y.: Fast and user-friendly non-linear principal manifold learning by method of elastic maps. In: 2015 IEEE International Conference on Data Science and Advanced Analytics, DSAA 2015, Campus des Cordeliers, Paris, France, 19–21 October 2015, pp. 1–9 (2015). https://​doi.​org/​10.​1109/​DSAA.​2015.​7344818
10.
Zurück zum Zitat Gorban, A., Sumner, N., Zinovyev, A.: Topological grammars for data approximation. Appl. Math. Lett. 20(4), 382–386 (2007)CrossRef Gorban, A., Sumner, N., Zinovyev, A.: Topological grammars for data approximation. Appl. Math. Lett. 20(4), 382–386 (2007)CrossRef
11.
Zurück zum Zitat Hankamer, B., Barber, J., Boekema, E.J.: Structure and membrane organization of photosystem II in green plants. Annu. Rev. Plant Biol. 48(1), 641–671 (1997)CrossRef Hankamer, B., Barber, J., Boekema, E.J.: Structure and membrane organization of photosystem II in green plants. Annu. Rev. Plant Biol. 48(1), 641–671 (1997)CrossRef
12.
Zurück zum Zitat Heinz, S., Liauw, P., Nickelsen, J., Nowaczyk, M.: Analysis of photosystem II biogenesis in cyanobacteria. Biochimica Et Biophysica Acta (BBA)-Bioenergetics 1857(3), 274–287 (2016) Heinz, S., Liauw, P., Nickelsen, J., Nowaczyk, M.: Analysis of photosystem II biogenesis in cyanobacteria. Biochimica Et Biophysica Acta (BBA)-Bioenergetics 1857(3), 274–287 (2016)
13.
Zurück zum Zitat Inoue-Kashino, N., Kashino, Y., Satoh, K., Terashima, I., Pakrasi, H.B.: PSBU provides a stable architecture for the oxygen-evolving system in cyanobacterial photosystem II. Biochemistry 44(36), 12214–12228 (2005)CrossRefPubMed Inoue-Kashino, N., Kashino, Y., Satoh, K., Terashima, I., Pakrasi, H.B.: PSBU provides a stable architecture for the oxygen-evolving system in cyanobacterial photosystem II. Biochemistry 44(36), 12214–12228 (2005)CrossRefPubMed
14.
Zurück zum Zitat Karapetyan, N.: Photosystem I of cyanobacteria: organization and functions. Adv. Biol. Chem. 41, 39–76 (2001) Karapetyan, N.: Photosystem I of cyanobacteria: organization and functions. Adv. Biol. Chem. 41, 39–76 (2001)
15.
Zurück zum Zitat Kirchhoff, H.: Structure-function relationships in photosynthetic membranes: challenges and emerging fields. Plant Sci. 266, 76–82 (2018)CrossRefPubMed Kirchhoff, H.: Structure-function relationships in photosynthetic membranes: challenges and emerging fields. Plant Sci. 266, 76–82 (2018)CrossRefPubMed
16.
Zurück zum Zitat Kirchhoff, H., Haase, W., Wegner, S., Danielsson, R., Ackermann, R., Albertsson, P.A.: Low-light-induced formation of semicrystalline photosystem II arrays in higher plant chloroplasts. Biochemistry 46(39), 11169–11176 (2007)CrossRefPubMed Kirchhoff, H., Haase, W., Wegner, S., Danielsson, R., Ackermann, R., Albertsson, P.A.: Low-light-induced formation of semicrystalline photosystem II arrays in higher plant chloroplasts. Biochemistry 46(39), 11169–11176 (2007)CrossRefPubMed
17.
Zurück zum Zitat Kirchhoff, H., Tremmel, I., Haase, W., Kubitscheck, U.: Supramolecular photosystem II organization in grana thylakoid membranes: evidence for a structured arrangement. Biochemistry 43(28), 9204–9213 (2004)CrossRefPubMed Kirchhoff, H., Tremmel, I., Haase, W., Kubitscheck, U.: Supramolecular photosystem II organization in grana thylakoid membranes: evidence for a structured arrangement. Biochemistry 43(28), 9204–9213 (2004)CrossRefPubMed
18.
Zurück zum Zitat Mabbitt, P.D., Wilbanks, S.M., Eaton-Rye, J.J.: Structure and function of the hydrophilic photosystem II assembly proteins: Psb27, Psb28 and Ycf48. Plant Physiol. Biochem. 81, 96–107 (2014)CrossRefPubMed Mabbitt, P.D., Wilbanks, S.M., Eaton-Rye, J.J.: Structure and function of the hydrophilic photosystem II assembly proteins: Psb27, Psb28 and Ycf48. Plant Physiol. Biochem. 81, 96–107 (2014)CrossRefPubMed
19.
Zurück zum Zitat Nelson, N., Ben-Shem, A.: The complex architecture of oxygenic photosynthesis. Nat. Rev. Mol. Cell Biol. 5(12), 971–982 (2004)CrossRefPubMed Nelson, N., Ben-Shem, A.: The complex architecture of oxygenic photosynthesis. Nat. Rev. Mol. Cell Biol. 5(12), 971–982 (2004)CrossRefPubMed
20.
Zurück zum Zitat Nelson, N., Yocum, C.F.: Structure and function of photosystems I and II. Annu. Rev. Plant Biol. 57, 521–565 (2006)CrossRefPubMed Nelson, N., Yocum, C.F.: Structure and function of photosystems I and II. Annu. Rev. Plant Biol. 57, 521–565 (2006)CrossRefPubMed
22.
Zurück zum Zitat Sadovsky, M.G., Senashova, M.Y., Malyshev, A.V.: Amazing symmetrical clustering in chloroplast genomes. BMC Bioinform. 21(2), 1–14 (2020) Sadovsky, M.G., Senashova, M.Y., Malyshev, A.V.: Amazing symmetrical clustering in chloroplast genomes. BMC Bioinform. 21(2), 1–14 (2020)
23.
Zurück zum Zitat Shen, J.R.: The structure of photosystem II and the mechanism of water oxidation in photosynthesis. Annu. Rev. Plant Biol. 66, 23–48 (2015)CrossRefPubMed Shen, J.R.: The structure of photosystem II and the mechanism of water oxidation in photosynthesis. Annu. Rev. Plant Biol. 66, 23–48 (2015)CrossRefPubMed
24.
Zurück zum Zitat Staehelin, L.A., Arntzen, C.J.: Regulation of chloroplast membrane function: protein phosphorylation changes the spatial organization of membrane components. J. Cell Biol. 97(5), 1327–1337 (1983)CrossRefPubMed Staehelin, L.A., Arntzen, C.J.: Regulation of chloroplast membrane function: protein phosphorylation changes the spatial organization of membrane components. J. Cell Biol. 97(5), 1327–1337 (1983)CrossRefPubMed
25.
Zurück zum Zitat Wang, Y., Wu, Y., Sun, K., Mi, Z.: A quadruple-band metal-nitride nanowire artificial photosynthesis system for high efficiency photocatalytic overall solar water splitting. Mater. Horizons 6(7), 1454–1462 (2019)CrossRef Wang, Y., Wu, Y., Sun, K., Mi, Z.: A quadruple-band metal-nitride nanowire artificial photosynthesis system for high efficiency photocatalytic overall solar water splitting. Mater. Horizons 6(7), 1454–1462 (2019)CrossRef
26.
Zurück zum Zitat Zhang, S., Wang, S., Guo, L., Chen, H., Tan, B., Jin, S.: An artificial photosynthesis system comprising a covalent triazine framework as an electron relay facilitator for photochemical carbon dioxide reduction. J. Mater. Chem. C 8(1), 192–200 (2020)CrossRef Zhang, S., Wang, S., Guo, L., Chen, H., Tan, B., Jin, S.: An artificial photosynthesis system comprising a covalent triazine framework as an electron relay facilitator for photochemical carbon dioxide reduction. J. Mater. Chem. C 8(1), 192–200 (2020)CrossRef
27.
Zurück zum Zitat Zlenko, D.V., Galochkina, T.V., Krasilnikov, P.M., Stadnichuk, I.N.: Coupled rows of PBS cores and PSII dimers in cyanobacteria: symmetry and structure. Photosynth. Res. 133(1), 245–260 (2017)CrossRefPubMed Zlenko, D.V., Galochkina, T.V., Krasilnikov, P.M., Stadnichuk, I.N.: Coupled rows of PBS cores and PSII dimers in cyanobacteria: symmetry and structure. Photosynth. Res. 133(1), 245–260 (2017)CrossRefPubMed
Metadaten
Titel
Comparative Analysis of the Spatial Structure Chloroplasts and Cyanobacteria Photosynthetic Systems I and II Genes
verfasst von
Maria Senashova
Michael Sadovsky
Copyright-Jahr
2022
DOI
https://doi.org/10.1007/978-3-031-07704-3_16

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