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2017 | Supplement | Buchkapitel

Learning-Based Multi-atlas Segmentation of the Lungs and Lobes in Proton MR Images

verfasst von : Hoileong Lee, Tahreema Matin, Fergus Gleeson, Vicente Grau

Erschienen in: Medical Image Computing and Computer Assisted Intervention − MICCAI 2017

Verlag: Springer International Publishing

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Abstract

Delineation of the lung and lobar anatomy in MR images is challenging due to the limited image contrast and the absence of visible interlobar fissures. Here we propose a novel automated lung and lobe segmentation method for pulmonary MR images. This segmentation method employs prior information of the lungs and lobes extracted from CT in the form of multiple MRI atlases, and adopts a learning-based atlas-encoding scheme, based on random forests, to improve the performance of multi-atlas segmentation. In particular, we encode each CT-derived MRI atlas by training an atlas-specific random forest for each structure of interest. In addition to appearance features, we also extract label context features from the registered atlases to introduce additional information to the non-linear mapping process. We evaluated our proposed framework on 10 clinical MR images acquired from COPD patients. It outperformed state-of-the-art approaches in segmenting the lungs and lobes, yielding a mean Dice score of 95.7%.

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Literatur
1.
Zurück zum Zitat Coupe, P., Manjon, J.V., Fonov, V., Pruessner, J., Robles, M., Collins, D.L.: Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation. NeuroImage 54(2), 940–954 (2011)CrossRef Coupe, P., Manjon, J.V., Fonov, V., Pruessner, J., Robles, M., Collins, D.L.: Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation. NeuroImage 54(2), 940–954 (2011)CrossRef
2.
Zurück zum Zitat Doel, T., Gavaghan, D.J., Grau, V.: Review of automatic pulmonary lobe segmentation methods from CT. Comput. Med. Imaging Grap. 40, 13–29 (2015)CrossRef Doel, T., Gavaghan, D.J., Grau, V.: Review of automatic pulmonary lobe segmentation methods from CT. Comput. Med. Imaging Grap. 40, 13–29 (2015)CrossRef
3.
Zurück zum Zitat Giraud, R., Ta, V.T., Papadakis, N., Manjón, J.V., Collins, D.L., Coupé, P.: An optimized patchmatch for multi-scale and multi-feature label fusion. NeuroImage 124(Part A), 770–782 (2016)CrossRef Giraud, R., Ta, V.T., Papadakis, N., Manjón, J.V., Collins, D.L., Coupé, P.: An optimized patchmatch for multi-scale and multi-feature label fusion. NeuroImage 124(Part A), 770–782 (2016)CrossRef
4.
Zurück zum Zitat Guo, F., Svenningsen, S., Eddy, R.L., Capaldi, D.P.I., Sheikh, K., Fenster, A., Parraga, G.: Anatomical pulmonary magnetic resonance imaging segmentation for regional structure-function measurements of asthma. Med. Phys. 43(6), 2911–2926 (2016)CrossRef Guo, F., Svenningsen, S., Eddy, R.L., Capaldi, D.P.I., Sheikh, K., Fenster, A., Parraga, G.: Anatomical pulmonary magnetic resonance imaging segmentation for regional structure-function measurements of asthma. Med. Phys. 43(6), 2911–2926 (2016)CrossRef
5.
Zurück zum Zitat Guo, F., Yuan, J., Rajchl, M., Svenningsen, S., PI Capaldi, D., Sheikh, K., Fenster, A., Parraga, G.: Globally optimal co-segmentation of three-dimensional pulmonary 1H and hyperpolarized 3He MRI with spatial consistence prior. Med. Image Anal. 23(1), 43–55 (2015)CrossRef Guo, F., Yuan, J., Rajchl, M., Svenningsen, S., PI Capaldi, D., Sheikh, K., Fenster, A., Parraga, G.: Globally optimal co-segmentation of three-dimensional pulmonary 1H and hyperpolarized 3He MRI with spatial consistence prior. Med. Image Anal. 23(1), 43–55 (2015)CrossRef
6.
Zurück zum Zitat Kohlmann, P., Strehlow, J., Jobst, B., Krass, S., Kuhnigk, J.M., Anjorin, A., Sedlaczek, O., Ley, S., Kauczor, H.U., Wielpütz, M.O.: Automatic lung segmentation method for MRI-based lung perfusion studies of patients with chronic obstructive pulmonary disease. Int. J. Comput. Assist. Radiol. Surg. 10(4), 403–417 (2015)CrossRef Kohlmann, P., Strehlow, J., Jobst, B., Krass, S., Kuhnigk, J.M., Anjorin, A., Sedlaczek, O., Ley, S., Kauczor, H.U., Wielpütz, M.O.: Automatic lung segmentation method for MRI-based lung perfusion studies of patients with chronic obstructive pulmonary disease. Int. J. Comput. Assist. Radiol. Surg. 10(4), 403–417 (2015)CrossRef
7.
Zurück zum Zitat Lelieveldt, B.P.F., Van Der Geest, R.J., Ramze Rezaee, M., Bosch, J.G., Reiber, J.H.C.: Anatomical model matching with fuzzy implicit surfaces for segmentation of thoracic volume scans. IEEE Trans. Med. Imaging 18(3), 218–230 (1999)CrossRef Lelieveldt, B.P.F., Van Der Geest, R.J., Ramze Rezaee, M., Bosch, J.G., Reiber, J.H.C.: Anatomical model matching with fuzzy implicit surfaces for segmentation of thoracic volume scans. IEEE Trans. Med. Imaging 18(3), 218–230 (1999)CrossRef
8.
Zurück zum Zitat Osareh, A., Shadgar, B.: A segmentation method of lung cavities using region aided geometric snakes. J. Med. Syst. 34(4), 419–433 (2010)CrossRef Osareh, A., Shadgar, B.: A segmentation method of lung cavities using region aided geometric snakes. J. Med. Syst. 34(4), 419–433 (2010)CrossRef
9.
Zurück zum Zitat Rikxoort, E.M.V., Ginneken, B.V.: Automated segmentation of pulmonary structures in thoracic computed tomography scans: a review. Phys. Med. Biol. 58, R187–220 (2013)CrossRef Rikxoort, E.M.V., Ginneken, B.V.: Automated segmentation of pulmonary structures in thoracic computed tomography scans: a review. Phys. Med. Biol. 58, R187–220 (2013)CrossRef
10.
Zurück zum Zitat Viola, P., Jones, M.J.: Robust real-time face detection. Int. J. Comput. Vision 57(2), 137–154 (2004)CrossRef Viola, P., Jones, M.J.: Robust real-time face detection. Int. J. Comput. Vision 57(2), 137–154 (2004)CrossRef
11.
Zurück zum Zitat Wang, H., Cao, Y., Syeda-Mahmood, T.: Multi-atlas segmentation with learning-based label fusion. In: Wu, G., Zhang, D., Zhou, L. (eds.) MLMI 2014. LNCS, vol. 8679, pp. 256–263. Springer, Cham (2014). doi:10.1007/978-3-319-10581-9_32CrossRef Wang, H., Cao, Y., Syeda-Mahmood, T.: Multi-atlas segmentation with learning-based label fusion. In: Wu, G., Zhang, D., Zhou, L. (eds.) MLMI 2014. LNCS, vol. 8679, pp. 256–263. Springer, Cham (2014). doi:10.​1007/​978-3-319-10581-9_​32CrossRef
12.
Zurück zum Zitat Wang, H., Suh, J.W., Das, S.R., Pluta, J.B., Craige, C., Yushkevich, P.A.: Multi-atlas segmentation with joint label fusion. IEEE Trans. Pattern Anal. Mach. Intell. 35(3), 611–623 (2013)CrossRef Wang, H., Suh, J.W., Das, S.R., Pluta, J.B., Craige, C., Yushkevich, P.A.: Multi-atlas segmentation with joint label fusion. IEEE Trans. Pattern Anal. Mach. Intell. 35(3), 611–623 (2013)CrossRef
13.
Zurück zum Zitat Warfield, S.K., Zou, K.H., Wells, W.M.: Simultaneous truth and performance level estimation (staple): an algorithm for the validation of image segmentation. IEEE Trans. Med. Imaging 23(7), 903–921 (2004)CrossRef Warfield, S.K., Zou, K.H., Wells, W.M.: Simultaneous truth and performance level estimation (staple): an algorithm for the validation of image segmentation. IEEE Trans. Med. Imaging 23(7), 903–921 (2004)CrossRef
14.
Zurück zum Zitat Zikic, D., Glocker, B., Criminisi, A.: Encoding atlases by randomized classification forests for efficient multi-atlas label propagation. Med. Image Anal. 18(8), 1262–1273 (2014)CrossRef Zikic, D., Glocker, B., Criminisi, A.: Encoding atlases by randomized classification forests for efficient multi-atlas label propagation. Med. Image Anal. 18(8), 1262–1273 (2014)CrossRef
Metadaten
Titel
Learning-Based Multi-atlas Segmentation of the Lungs and Lobes in Proton MR Images
verfasst von
Hoileong Lee
Tahreema Matin
Fergus Gleeson
Vicente Grau
Copyright-Jahr
2017
DOI
https://doi.org/10.1007/978-3-319-66182-7_13

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