Skip to main content

2019 | OriginalPaper | Buchkapitel

InceptionGCN: Receptive Field Aware Graph Convolutional Network for Disease Prediction

verfasst von : Anees Kazi, Shayan Shekarforoush, S. Arvind Krishna, Hendrik Burwinkel, Gerome Vivar, Karsten Kortüm, Seyed-Ahmad Ahmadi, Shadi Albarqouni, Nassir Navab

Erschienen in: Information Processing in Medical Imaging

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Geometric deep learning provides a principled and versatile manner for integration of imaging and non-imaging modalities in the medical domain. Graph Convolutional Networks (GCNs) in particular have been explored on a wide variety of problems such as disease prediction, segmentation, and matrix completion by leveraging large, multi-modal datasets. In this paper, we introduce a new spectral domain architecture for deep learning on graphs for disease prediction. The novelty lies in defining geometric ‘inception modules’ which are capable of capturing intra- and inter-graph structural heterogeneity during convolutions. We design filters with different kernel sizes to build our architecture. We show our disease prediction results on two publicly available datasets. Further, we provide insights on the behaviour of regular GCNs and our proposed model under varying input scenarios on simulated data.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
1.
Zurück zum Zitat Defferrard, M., Bresson, X., Vandergheynst, P.: Convolutional neural networks on graphs with fast localized spectral filtering. In: Advances in Neural Information Processing Systems, pp. 3844–3852 (2016) Defferrard, M., Bresson, X., Vandergheynst, P.: Convolutional neural networks on graphs with fast localized spectral filtering. In: Advances in Neural Information Processing Systems, pp. 3844–3852 (2016)
2.
Zurück zum Zitat Ktena, S.I., et al.: Metric learning with spectral graph convolutions on brain connectivity networks. NeuroImage 169, 431–442 (2018)CrossRef Ktena, S.I., et al.: Metric learning with spectral graph convolutions on brain connectivity networks. NeuroImage 169, 431–442 (2018)CrossRef
4.
Zurück zum Zitat Ma, T., Xiao, C., Zhou, J., Wang, F.: Drug similarity integration through attentive multi-view graph auto-encoders. arXiv preprint arXiv:1804.10850 (2018) Ma, T., Xiao, C., Zhou, J., Wang, F.: Drug similarity integration through attentive multi-view graph auto-encoders. arXiv preprint arXiv:​1804.​10850 (2018)
5.
Zurück zum Zitat Szegedy, C., et al.: Going deeper with convolutions. In: Proceedings of the IEEE Conference on CVPR, pp. 1–9 (2015) Szegedy, C., et al.: Going deeper with convolutions. In: Proceedings of the IEEE Conference on CVPR, pp. 1–9 (2015)
6.
Zurück zum Zitat Kipf, T.N., Welling, M.: Semi-supervised classification with graph convolutional networks. arXiv preprint arXiv:1609.02907 (2016) Kipf, T.N., Welling, M.: Semi-supervised classification with graph convolutional networks. arXiv preprint arXiv:​1609.​02907 (2016)
7.
Zurück zum Zitat Liu, Z., Chen, C., Li, L., Zhou, J., Li, X., Song, L.: GeniePath: graph neural networks with adaptive receptive paths. arXiv preprint arXiv:1802.00910 (2018) Liu, Z., Chen, C., Li, L., Zhou, J., Li, X., Song, L.: GeniePath: graph neural networks with adaptive receptive paths. arXiv preprint arXiv:​1802.​00910 (2018)
8.
Zurück zum Zitat Xu, K., Li, C., Tian, Y., Sonobe, T., Kawarabayashi, K.-I., Jegelka, S.: Representation learning on graphs with jumping knowledge networks. arXiv preprint arXiv:1806.03536 (2018) Xu, K., Li, C., Tian, Y., Sonobe, T., Kawarabayashi, K.-I., Jegelka, S.: Representation learning on graphs with jumping knowledge networks. arXiv preprint arXiv:​1806.​03536 (2018)
9.
Zurück zum Zitat Huang, G., Liu, Z., Van Der Maaten, L., Weinberger, K.Q.: Densely connected convolutional networks. In: CVPR, vol. 1, p. 3 (2017) Huang, G., Liu, Z., Van Der Maaten, L., Weinberger, K.Q.: Densely connected convolutional networks. In: CVPR, vol. 1, p. 3 (2017)
10.
Zurück zum Zitat Hamilton, W., Ying, Z., Leskovec, J.: Inductive representation learning on large graphs. In: Advances in Neural Information Processing Systems, pp. 1024–1034 (2017) Hamilton, W., Ying, Z., Leskovec, J.: Inductive representation learning on large graphs. In: Advances in Neural Information Processing Systems, pp. 1024–1034 (2017)
12.
Zurück zum Zitat Hammond, D.K., Vandergheynst, P., Gribonval, R.: Wavelets on graphs via spectral graph theory. Appl. Comput. Harmonic Anal. 30(2), 129–150 (2011)MathSciNetCrossRef Hammond, D.K., Vandergheynst, P., Gribonval, R.: Wavelets on graphs via spectral graph theory. Appl. Comput. Harmonic Anal. 30(2), 129–150 (2011)MathSciNetCrossRef
13.
Zurück zum Zitat Marinescu, R.V., et al.: TADPOLE challenge: prediction of longitudinal evolution in Alzheimer’s disease. arXiv preprint arXiv:1805.03909 (2018) Marinescu, R.V., et al.: TADPOLE challenge: prediction of longitudinal evolution in Alzheimer’s disease. arXiv preprint arXiv:​1805.​03909 (2018)
14.
Zurück zum Zitat Abraham, A., et al.: Deriving reproducible biomarkers from multi-site resting-state data: an autism-based example. NeuroImage 147, 736–745 (2017)CrossRef Abraham, A., et al.: Deriving reproducible biomarkers from multi-site resting-state data: an autism-based example. NeuroImage 147, 736–745 (2017)CrossRef
16.
Zurück zum Zitat Kazi, A., Albarqouni, S., Kortuem, K., Navab, N.: Multi layered-parallel graph convolutional network (ML-PGCN) for disease prediction. arXiv preprint arXiv:1804.10776 (2018) Kazi, A., Albarqouni, S., Kortuem, K., Navab, N.: Multi layered-parallel graph convolutional network (ML-PGCN) for disease prediction. arXiv preprint arXiv:​1804.​10776 (2018)
Metadaten
Titel
InceptionGCN: Receptive Field Aware Graph Convolutional Network for Disease Prediction
verfasst von
Anees Kazi
Shayan Shekarforoush
S. Arvind Krishna
Hendrik Burwinkel
Gerome Vivar
Karsten Kortüm
Seyed-Ahmad Ahmadi
Shadi Albarqouni
Nassir Navab
Copyright-Jahr
2019
DOI
https://doi.org/10.1007/978-3-030-20351-1_6

Premium Partner