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2016 | OriginalPaper | Buchkapitel

Automated Plant Species Identification: Challenges and Opportunities

verfasst von : Erick Mata-Montero, Jose Carranza-Rojas

Erschienen in: ICT for Promoting Human Development and Protecting the Environment

Verlag: Springer International Publishing

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Abstract

The number of species of macro organisms on the planet is estimated at about 10 million. This staggering diversity and the need to better understand it led inevitably to the development of classification schemes called biological taxonomies. Unfortunately, in addition to this enormous diversity, the traditional identification and classification workflows are both slow and error-prone; classification expertise is in the hands of a small number of expert taxonomists; and to make things worse, the number of taxonomists has steadily declined in recent years. Automated identification of organisms has therefore become not just a long time desire but a need to better understand, use, and save biodiversity. This paper presents a survey of recent efforts to use computer vision and machine learning techniques to identify organisms. It focuses on the use of leaf images to identify plant species. In addition, it presents the main technical and scientific challenges as well as the opportunities for herbaria and cybertaxonomists to take a quantum leap towards identifying biodiversity efficiently and empowering the general public by putting in their hands automated identification tools.

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Literatur
1.
Zurück zum Zitat MacLeod, N.: Automated Taxon Identification in Systematics: Theory, Approaches and Applications. Systematics Association Special Volumes. Taylor & Francis, Boca Raton (2007)CrossRef MacLeod, N.: Automated Taxon Identification in Systematics: Theory, Approaches and Applications. Systematics Association Special Volumes. Taylor & Francis, Boca Raton (2007)CrossRef
2.
Zurück zum Zitat Bookstein, F.L.: Morphometric Tools for Landmark Data: Geometry and Biology. Cambridge University Press, Cambridge (1997)MATH Bookstein, F.L.: Morphometric Tools for Landmark Data: Geometry and Biology. Cambridge University Press, Cambridge (1997)MATH
3.
Zurück zum Zitat Adams, D.C., Rohlf, F.J., Slice, D.E.: Geometric morphometrics: ten years of progress following the revolution. Ital. J. Zool. 71, 5–16 (2004)CrossRef Adams, D.C., Rohlf, F.J., Slice, D.E.: Geometric morphometrics: ten years of progress following the revolution. Ital. J. Zool. 71, 5–16 (2004)CrossRef
4.
Zurück zum Zitat Hebert, P.D.N., Cywinska, A., Ball, S.L., Dewaard, J.R.: Biological identifications through DNA barcodes. Proc. Biol. Sci 270, 313–321 (2003)CrossRef Hebert, P.D.N., Cywinska, A., Ball, S.L., Dewaard, J.R.: Biological identifications through DNA barcodes. Proc. Biol. Sci 270, 313–321 (2003)CrossRef
5.
Zurück zum Zitat Ebach, M.C., Carvalho, M.R.D.: Anti-intellectualism in the DNA barcoding enterprise. Zoologia (Curitiba) 27, 165–178 (2010)CrossRef Ebach, M.C., Carvalho, M.R.D.: Anti-intellectualism in the DNA barcoding enterprise. Zoologia (Curitiba) 27, 165–178 (2010)CrossRef
6.
Zurück zum Zitat Rubinoff, D., Cameron, S., Will, K.: A genomic perspective on the shortcomings of mitochondrial DNA for “barcoding” identification. J. Hered. 97(6), 581–594 (2006)CrossRef Rubinoff, D., Cameron, S., Will, K.: A genomic perspective on the shortcomings of mitochondrial DNA for “barcoding” identification. J. Hered. 97(6), 581–594 (2006)CrossRef
7.
Zurück zum Zitat Joly, A., et al.: LifeCLEF 2015: multimedia life species identification challenges. In: Mothe, J., Savoy, J., Kamps, J., Pinel-Sauvagnat, K., Jones, G., San Juan, E., Capellato, L., Ferro, N. (eds.) CLEF 2015. LNCS, vol. 9283, pp. 462–483. Springer, Heidelberg (2015). doi:10.1007/978-3-319-24027-5_46 CrossRef Joly, A., et al.: LifeCLEF 2015: multimedia life species identification challenges. In: Mothe, J., Savoy, J., Kamps, J., Pinel-Sauvagnat, K., Jones, G., San Juan, E., Capellato, L., Ferro, N. (eds.) CLEF 2015. LNCS, vol. 9283, pp. 462–483. Springer, Heidelberg (2015). doi:10.​1007/​978-3-319-24027-5_​46 CrossRef
8.
Zurück zum Zitat Andreopoulos, A., Tsotsos, J.K.: 50 years of object recognition: directions forward. Comput. Vis. Image Underst. 117(8), 827–891 (2013)CrossRef Andreopoulos, A., Tsotsos, J.K.: 50 years of object recognition: directions forward. Comput. Vis. Image Underst. 117(8), 827–891 (2013)CrossRef
9.
Zurück zum Zitat Lagerwall, L.D., Viriri, S.: Plant classification using leaf recognition. In: Proceedings of the 22nd Annual Symposium of the Pattern Recognition Association of South Africa, pp. 91–95, November 2011 Lagerwall, L.D., Viriri, S.: Plant classification using leaf recognition. In: Proceedings of the 22nd Annual Symposium of the Pattern Recognition Association of South Africa, pp. 91–95, November 2011
10.
Zurück zum Zitat Rashad, M.Z., El-Desouky, B.S., Khawasik, M.Z.: Plants images classification based on textural features using combined classifier. Int. J. Comput. Sci. Inf. Technol. 3(4), 93–100 (2011) Rashad, M.Z., El-Desouky, B.S., Khawasik, M.Z.: Plants images classification based on textural features using combined classifier. Int. J. Comput. Sci. Inf. Technol. 3(4), 93–100 (2011)
11.
Zurück zum Zitat Bhardwaj, A., Kaur, M., Kumar, A.: Recognition of plants by leaf image using moment invariant and texture analysis. Int. J. Innov. Appl. Stud. 3(1), 237–248 (2013) Bhardwaj, A., Kaur, M., Kumar, A.: Recognition of plants by leaf image using moment invariant and texture analysis. Int. J. Innov. Appl. Stud. 3(1), 237–248 (2013)
12.
Zurück zum Zitat Wu, S., Bao, F., Xu, E., Wang, Y.-X., Chang, Y.-F., Xiang, Q.-L.: A leaf recognition algorithm for plant classification using probabilistic neural network. In: 2007 IEEE International Symposium on Signal Processing and Information Technology, pp. 11–16, December 2007 Wu, S., Bao, F., Xu, E., Wang, Y.-X., Chang, Y.-F., Xiang, Q.-L.: A leaf recognition algorithm for plant classification using probabilistic neural network. In: 2007 IEEE International Symposium on Signal Processing and Information Technology, pp. 11–16, December 2007
13.
Zurück zum Zitat Herdiyeni, Y., Santoni, M.: Combination of morphological, local binary pattern variance and color moments features for indonesian medicinal plants identification. In: 2012 International Conference on Advanced Computer Science and Information Systems (ICACSIS), pp. 255–259, December 2012 Herdiyeni, Y., Santoni, M.: Combination of morphological, local binary pattern variance and color moments features for indonesian medicinal plants identification. In: 2012 International Conference on Advanced Computer Science and Information Systems (ICACSIS), pp. 255–259, December 2012
14.
Zurück zum Zitat Kumar, N., Belhumeur, P.N., Biswas, A., Jacobs, D.W., Kress, W.J., Lopez, I.C., Soares, J.V.B.: Leafsnap: a computer vision system for automatic plant species identification. In: Fitzgibbon, A., Lazebnik, S., Perona, P., Sato, Y., Schmid, C. (eds.) Computer Vision – ECCV 2012. LNCS, vol. 7573, pp. 502–516. Springer, Heidelberg (2012) Kumar, N., Belhumeur, P.N., Biswas, A., Jacobs, D.W., Kress, W.J., Lopez, I.C., Soares, J.V.B.: Leafsnap: a computer vision system for automatic plant species identification. In: Fitzgibbon, A., Lazebnik, S., Perona, P., Sato, Y., Schmid, C. (eds.) Computer Vision – ECCV 2012. LNCS, vol. 7573, pp. 502–516. Springer, Heidelberg (2012)
15.
Zurück zum Zitat Kumar, P.M., Kamble, M., Pawar, S., Patil, P., Bonde, N.: Survey on techniques for plant leaf classification Kumar, P.M., Kamble, M., Pawar, S., Patil, P., Bonde, N.: Survey on techniques for plant leaf classification
16.
Zurück zum Zitat Metre, V., Ghorpade, J.: An overview of the research on texture based plant leaf classification (2013). CoRR, vol. abs/1306.4345 Metre, V., Ghorpade, J.: An overview of the research on texture based plant leaf classification (2013). CoRR, vol. abs/1306.4345
17.
Zurück zum Zitat Li, Y., Chi, Z., Feng, D.: Leaf vein extraction using independent component analysis. In: IEEE International Conference on Systems, Man and Cybernetics, 2006, SMC 2006, vol. 5, pp. 3890–3894, October 2006 Li, Y., Chi, Z., Feng, D.: Leaf vein extraction using independent component analysis. In: IEEE International Conference on Systems, Man and Cybernetics, 2006, SMC 2006, vol. 5, pp. 3890–3894, October 2006
18.
Zurück zum Zitat Mata-Montero, E., Carranza-Rojas, J.: A texture and curvature bimodal leaf recognition model for identification of costa rican plant species. In: 2015 Latin American Computing Conference (CLEI), pp. 1–12, October 2015 Mata-Montero, E., Carranza-Rojas, J.: A texture and curvature bimodal leaf recognition model for identification of costa rican plant species. In: 2015 Latin American Computing Conference (CLEI), pp. 1–12, October 2015
19.
Zurück zum Zitat Soares, J., Jacobs, D.: Efficient segmentation of leaves in semi-controlled conditions. Mach. Vis. Appl. 24(8), 1623–1643 (2013)CrossRef Soares, J., Jacobs, D.: Efficient segmentation of leaves in semi-controlled conditions. Mach. Vis. Appl. 24(8), 1623–1643 (2013)CrossRef
20.
Zurück zum Zitat Cerutti, G., Tougne, L., Mille, J., Vacavant, A., Coquin, D.: Understanding leaves in natural images - a model-based approach for tree species identification. Comput. Vis. Image Underst. 117(10), 1482–1501 (2013)CrossRef Cerutti, G., Tougne, L., Mille, J., Vacavant, A., Coquin, D.: Understanding leaves in natural images - a model-based approach for tree species identification. Comput. Vis. Image Underst. 117(10), 1482–1501 (2013)CrossRef
21.
Zurück zum Zitat Le, T.-L., Duong, N.-D., Nguyen, V.-T., Vu, H., Hoang, V.-N., Nguyen, T.T.-N.: Complex background leaf-based plant identification method based on interactive segmentation and kernel descriptor. In: Proceedings of the 2nd International Workshop on Environmental Multimedia Retrieval, EMR 2015, pp. 3–8. ACM, New York (2015) Le, T.-L., Duong, N.-D., Nguyen, V.-T., Vu, H., Hoang, V.-N., Nguyen, T.T.-N.: Complex background leaf-based plant identification method based on interactive segmentation and kernel descriptor. In: Proceedings of the 2nd International Workshop on Environmental Multimedia Retrieval, EMR 2015, pp. 3–8. ACM, New York (2015)
22.
Zurück zum Zitat Zhao, C., Chan, S.S., Cham, W.-K., Chu, L.: Plant identification using leaf shapes–a pattern counting approach. Pattern Recogn. 48(10), 3203–3215 (2015)CrossRef Zhao, C., Chan, S.S., Cham, W.-K., Chu, L.: Plant identification using leaf shapes–a pattern counting approach. Pattern Recogn. 48(10), 3203–3215 (2015)CrossRef
23.
Zurück zum Zitat Herdiyeni, Y., Kusmana, I.: Fusion of local binary patterns features for tropical medicinal plants identification. In: 2013 International Conference on Advanced Computer Science and Information Systems (ICACSIS), pp. 353–357, September 2013 Herdiyeni, Y., Kusmana, I.: Fusion of local binary patterns features for tropical medicinal plants identification. In: 2013 International Conference on Advanced Computer Science and Information Systems (ICACSIS), pp. 353–357, September 2013
24.
Zurück zum Zitat Nguyen, Q., Le, T., Pham, N.: Leaf based plant identification system for android using surf features in combination with bag of words model and supervised learning. In: International Conference on Advanced Technologies for Communications (ATC), October 2013 Nguyen, Q., Le, T., Pham, N.: Leaf based plant identification system for android using surf features in combination with bag of words model and supervised learning. In: International Conference on Advanced Technologies for Communications (ATC), October 2013
25.
Zurück zum Zitat Sun, Z., Lu, S., Guo, X., Tian, Y.: Leaf vein and contour extraction from point cloud data. In: 2011 International Conference on Virtual Reality and Visualization (ICVRV), pp. 11–16, November 2011 Sun, Z., Lu, S., Guo, X., Tian, Y.: Leaf vein and contour extraction from point cloud data. In: 2011 International Conference on Virtual Reality and Visualization (ICVRV), pp. 11–16, November 2011
26.
Zurück zum Zitat Ghiassi, M., Lee, S., Nitin, M., Lu, H., Jiang, W.: Classification of Camellia (Theaceae) species using leaf architecture variations and pattern recognition techniques (2012) Ghiassi, M., Lee, S., Nitin, M., Lu, H., Jiang, W.: Classification of Camellia (Theaceae) species using leaf architecture variations and pattern recognition techniques (2012)
27.
Zurück zum Zitat Krizhevsky, A., Sutskever, I., Hinton, G.E.: Imagenet classification with deep convolutional neural networks. In: Bartlett, P., Pereira, F., Burges, C., Bottou, L., Weinberger, K. (eds.) Advances in Neural Information Processing Systems 25, pp. 1106–1114 (2012) Krizhevsky, A., Sutskever, I., Hinton, G.E.: Imagenet classification with deep convolutional neural networks. In: Bartlett, P., Pereira, F., Burges, C., Bottou, L., Weinberger, K. (eds.) Advances in Neural Information Processing Systems 25, pp. 1106–1114 (2012)
28.
Zurück zum Zitat Lee, S.H., Chan, C.S., Wilkin, P., Remagnino, P.: Deep-plant: plant identification with convolutional neural networks (2015). CoRR, vol. abs/1506.08425 Lee, S.H., Chan, C.S., Wilkin, P., Remagnino, P.: Deep-plant: plant identification with convolutional neural networks (2015). CoRR, vol. abs/1506.08425
29.
Zurück zum Zitat Simard, P.Y., Steinkraus, D., Platt, J.C.: Best practices for convolutional neural networks applied to visual document analysis. In: Proceedings of the Seventh International Conference on Document Analysis and Recognition, ICDAR 2003, vol. 2, p. 958. IEEE Computer Society, Washington, DC (2003) Simard, P.Y., Steinkraus, D., Platt, J.C.: Best practices for convolutional neural networks applied to visual document analysis. In: Proceedings of the Seventh International Conference on Document Analysis and Recognition, ICDAR 2003, vol. 2, p. 958. IEEE Computer Society, Washington, DC (2003)
Metadaten
Titel
Automated Plant Species Identification: Challenges and Opportunities
verfasst von
Erick Mata-Montero
Jose Carranza-Rojas
Copyright-Jahr
2016
DOI
https://doi.org/10.1007/978-3-319-44447-5_3

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