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2015 | OriginalPaper | Buchkapitel

Mutual Interaction Study Between DnaK-GroEL-FtSH with Heat Shock Regulator σ32 to Explain Prokaryotic Heat Shock Regulation

verfasst von : Sourav Singha Roy, Monobesh Patra, Rakhi Dasgupta, Angshuman Bagchi

Erschienen in: Information Systems Design and Intelligent Applications

Verlag: Springer India

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Abstract

Heat shock response in Escherichia coli is mainly controlled by the alternative transcription factor σ32. This response leads to an up-regulation of heat shock proteins including chaperones and proteases. The activity and stability of σ32 is in turn altered through mutual interactions with these heat shock proteins. The work reported here mainly deals with the docking of σ32 with the chaperone GroEL and protease FtsH. The findings of the above studies together with the σ32—DnaK docking study reported earlier suggest that the binding of σ32 with GroEL and DnaK at normal temperature is stronger compared to those at high temperature. With rise in temperature σ32 adopts an open conformation and this probably favors binding with FtsH and renders it for degradation by FtsH.

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Literatur
1.
Zurück zum Zitat Morimoto, R.I., Tissieres, A., Georgopoulos, C.: Heat Shock Proteins and Molecular Chaperones. Cold Spring Harbor Lab. Press, Plainview (1994) Morimoto, R.I., Tissieres, A., Georgopoulos, C.: Heat Shock Proteins and Molecular Chaperones. Cold Spring Harbor Lab. Press, Plainview (1994)
2.
Zurück zum Zitat Straus, D.B., Walter, W.A., Gross, C.A.: The heat shock response of E. coli is regulated by changes in the concentration of σ32. Nature 329, 348–351 (1987)CrossRef Straus, D.B., Walter, W.A., Gross, C.A.: The heat shock response of E. coli is regulated by changes in the concentration of σ32. Nature 329, 348–351 (1987)CrossRef
3.
Zurück zum Zitat Yura, T., Nakahigashi, K.: Regulation of the heat-shock response. Curr. Opin. Microbiol. 2, 153–158 (1999)CrossRef Yura, T., Nakahigashi, K.: Regulation of the heat-shock response. Curr. Opin. Microbiol. 2, 153–158 (1999)CrossRef
4.
Zurück zum Zitat Guisbert, E., Herman, C., Lu, C.Z., et al.: A chaperone network controls the heat shock response in E. coli. Genes Dev. 18, 2812–2821 (2004)CrossRef Guisbert, E., Herman, C., Lu, C.Z., et al.: A chaperone network controls the heat shock response in E. coli. Genes Dev. 18, 2812–2821 (2004)CrossRef
5.
Zurück zum Zitat Tomoyasu, T., Ogura, T., Tatsuta, T., et al.: Levels of DnaK and DnaJ provide tight control of heat shock gene expression and protein repair in Escherichia coli. Mol. Microbiol. 30, 567–581 (1998)CrossRef Tomoyasu, T., Ogura, T., Tatsuta, T., et al.: Levels of DnaK and DnaJ provide tight control of heat shock gene expression and protein repair in Escherichia coli. Mol. Microbiol. 30, 567–581 (1998)CrossRef
6.
Zurück zum Zitat Gamer, J., Multhaup, G., Tomoyasu, T., et al.: A cycle of binding and release of the DnaK, DnaJ and GrpE chaperones regulates activity of the Escherichia coli heat shock transcription factor σ32. EMBO J. 15, 607–617 (1996) Gamer, J., Multhaup, G., Tomoyasu, T., et al.: A cycle of binding and release of the DnaK, DnaJ and GrpE chaperones regulates activity of the Escherichia coli heat shock transcription factor σ32. EMBO J. 15, 607–617 (1996)
7.
Zurück zum Zitat Tatsuta, T., Tomoyasu, T., Bukau, B., et al.: Heat shock regulation in the FtsH null mutant of Escherichia coli: dissection of stability and activity control mechanisms of σ32 in vivo. Mol. Microbiol. 30, 583–593 (1998)CrossRef Tatsuta, T., Tomoyasu, T., Bukau, B., et al.: Heat shock regulation in the FtsH null mutant of Escherichia coli: dissection of stability and activity control mechanisms of σ32 in vivo. Mol. Microbiol. 30, 583–593 (1998)CrossRef
8.
Zurück zum Zitat Chattopadhyay, R., Roy, S.: DnaK-σ32 interaction is temperature-dependent. Implication for the mechanism of heat shock response. J. Biol. Chem. 277, 33641–33647 (2002)CrossRef Chattopadhyay, R., Roy, S.: DnaK-σ32 interaction is temperature-dependent. Implication for the mechanism of heat shock response. J. Biol. Chem. 277, 33641–33647 (2002)CrossRef
9.
Zurück zum Zitat Herman, C., Prakash, S., Lu, C.Z., et al.: Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH. Mol. Cell 11, 659–669 (2003)CrossRef Herman, C., Prakash, S., Lu, C.Z., et al.: Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH. Mol. Cell 11, 659–669 (2003)CrossRef
10.
Zurück zum Zitat Dougan, D.A., Mogk, A., Zeth, K., et al.: AAA+ proteins and substrate recognition, it all depends on their partner in crime. FEBS Lett. 529, 6–10 (2002)CrossRef Dougan, D.A., Mogk, A., Zeth, K., et al.: AAA+ proteins and substrate recognition, it all depends on their partner in crime. FEBS Lett. 529, 6–10 (2002)CrossRef
11.
Zurück zum Zitat Guisbert, E., Yura, T., Rhodius, V.A., et al.: Convergence of molecular, modeling, and systems approaches for an understanding of the Escherichia coli heat shock response. Micro. Biol. Mol. Biol. Rev. 72, 545–554 (2008)CrossRef Guisbert, E., Yura, T., Rhodius, V.A., et al.: Convergence of molecular, modeling, and systems approaches for an understanding of the Escherichia coli heat shock response. Micro. Biol. Mol. Biol. Rev. 72, 545–554 (2008)CrossRef
12.
Zurück zum Zitat Roy, S.S., Patra, M., Dasgupta, R., et al.: A structural insight into the prokaryotic heat shock transcription regulatory protein σ32: an implication of σ32-DnaK interaction. Bioinformation 8, 1026–1029 (2012)CrossRef Roy, S.S., Patra, M., Dasgupta, R., et al.: A structural insight into the prokaryotic heat shock transcription regulatory protein σ32: an implication of σ32-DnaK interaction. Bioinformation 8, 1026–1029 (2012)CrossRef
13.
Zurück zum Zitat Magrane, M., The UniProt Consortium.: UniProt knowledgebase: a hub of integrated protein data. Database, bar009 (2011) Magrane, M., The UniProt Consortium.: UniProt knowledgebase: a hub of integrated protein data. Database, bar009 (2011)
14.
Zurück zum Zitat Bernstein, F.C., Koetzle, T.F., Williams, G.J., et al.: The protein data bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112, 535 (1977)CrossRef Bernstein, F.C., Koetzle, T.F., Williams, G.J., et al.: The protein data bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112, 535 (1977)CrossRef
15.
Zurück zum Zitat Altschul, S.F., Gish, W., Miller, W., et al.: Basic local alignment search tool. J. Mol. Biol. 215, 403–410 (1990)CrossRef Altschul, S.F., Gish, W., Miller, W., et al.: Basic local alignment search tool. J. Mol. Biol. 215, 403–410 (1990)CrossRef
16.
Zurück zum Zitat Bieniossek, C., Schalch, T., Bumann, M., et al.: The molecular architecture of the metalloprotease FtsH. Proc. Natl. Acad. Sci. U. S. A. 103, 3066–3071 (2006)CrossRef Bieniossek, C., Schalch, T., Bumann, M., et al.: The molecular architecture of the metalloprotease FtsH. Proc. Natl. Acad. Sci. U. S. A. 103, 3066–3071 (2006)CrossRef
17.
Zurück zum Zitat Laskowski, R.A., Macarthur, M.W., Moss, D.S., et al.: PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst. 26, 283–291 (1993)CrossRef Laskowski, R.A., Macarthur, M.W., Moss, D.S., et al.: PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst. 26, 283–291 (1993)CrossRef
18.
Zurück zum Zitat Lüthy, R., Bowie, J.U., Eisenberg, D.: Assessment of protein models with three-dimensional profiles. Nature 356, 83–85 (1992)CrossRef Lüthy, R., Bowie, J.U., Eisenberg, D.: Assessment of protein models with three-dimensional profiles. Nature 356, 83–85 (1992)CrossRef
19.
Zurück zum Zitat Ramachandran, G.N., Ramkrishnan, C., Sasisekharanan, V.: Conformation of polypeptides and proteins. J. Mol. Biol. 7, 95–99 (1963)CrossRef Ramachandran, G.N., Ramkrishnan, C., Sasisekharanan, V.: Conformation of polypeptides and proteins. J. Mol. Biol. 7, 95–99 (1963)CrossRef
20.
Zurück zum Zitat Zhu, X., Zhao, X., Burkholder, W.F., et al.: Structural analysis of substrate binding by the molecular chaperone DnaK. Science 272, 1606–1614 (1996)CrossRef Zhu, X., Zhao, X., Burkholder, W.F., et al.: Structural analysis of substrate binding by the molecular chaperone DnaK. Science 272, 1606–1614 (1996)CrossRef
21.
Zurück zum Zitat Chaudhry, C., Farr, G.W., Todd, M.J., et al.: Role of the gamma-phosphate of ATP in triggering protein folding by GroEL-GroES: function, structure and energetics. EMBO J. 22, 4877–4887 (2003)CrossRef Chaudhry, C., Farr, G.W., Todd, M.J., et al.: Role of the gamma-phosphate of ATP in triggering protein folding by GroEL-GroES: function, structure and energetics. EMBO J. 22, 4877–4887 (2003)CrossRef
22.
Zurück zum Zitat Comeau, S.R., Gatchell, D.W., Vajda, S., et al.: ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinformatics 20, 45–50 (2004)CrossRef Comeau, S.R., Gatchell, D.W., Vajda, S., et al.: ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinformatics 20, 45–50 (2004)CrossRef
23.
Zurück zum Zitat Chen, R., Li, L., Weng, Z.: ZDOCK: an initial-stage protein docking algorithm. Proteins 52, 80–87 (2003)CrossRef Chen, R., Li, L., Weng, Z.: ZDOCK: an initial-stage protein docking algorithm. Proteins 52, 80–87 (2003)CrossRef
24.
Zurück zum Zitat van der Spoel, D., Lindahl, E., Hess, B., et al.: Gromacs user manual, version 4.5.4; Department of Biophysical Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands. www.gromacs.org (2011) van der Spoel, D., Lindahl, E., Hess, B., et al.: Gromacs user manual, version 4.5.4; Department of Biophysical Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands. www.​gromacs.​org (2011)
25.
Zurück zum Zitat Brooks, B.R., Bruccoleri, R.E., Olafson, B.D., et al.: CHARMM: A program for macromolecular energy minimization and dynamics calculations. J. Comp. Chem. 4, 187–217 (1983)CrossRef Brooks, B.R., Bruccoleri, R.E., Olafson, B.D., et al.: CHARMM: A program for macromolecular energy minimization and dynamics calculations. J. Comp. Chem. 4, 187–217 (1983)CrossRef
26.
Zurück zum Zitat Tomoyasu, T., Arsene, F., Ogura, T., et al.: The C terminus of σ32 is not essential for degradation by FtsH. J. Bacteriol. 183, 5911–5917 (2001)CrossRef Tomoyasu, T., Arsene, F., Ogura, T., et al.: The C terminus of σ32 is not essential for degradation by FtsH. J. Bacteriol. 183, 5911–5917 (2001)CrossRef
Metadaten
Titel
Mutual Interaction Study Between DnaK-GroEL-FtSH with Heat Shock Regulator σ32 to Explain Prokaryotic Heat Shock Regulation
verfasst von
Sourav Singha Roy
Monobesh Patra
Rakhi Dasgupta
Angshuman Bagchi
Copyright-Jahr
2015
Verlag
Springer India
DOI
https://doi.org/10.1007/978-81-322-2247-7_7

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