Ausgabe 1/2022
Building the NeuroCommons
Inhalt (20 Artikel)
Reflections on Data Sharing Practices in Spinal Cord Injury Research
John C. Gensel, Michael B. Orr
Data-Theoretical Synthesis of the Early Developmental Process
Bradly Alicea, Richard Gordon, Thomas E. Portegys
A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility
Mathew Birdsall Abrams, Jan G. Bjaalie, Samir Das, Gary F. Egan, Satrajit S. Ghosh, Wojtek J. Goscinski, Jeffrey S. Grethe, Jeanette Hellgren Kotaleski, Eric Tatt Wei Ho, David N. Kennedy, Linda J. Lanyon, Trygve B. Leergaard, Helen S. Mayberg, Luciano Milanesi, Roman Mouček, J. B. Poline, Prasun K. Roy, Stephen C. Strother, Tong Boon Tang, Paul Tiesinga, Thomas Wachtler, Daniel K. Wójcik, Maryann E. Martone
Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility
Mathew Birdsall Abrams, Jan G. Bjaalie, Samir Das, Gary F. Egan, Satrajit S. Ghosh, Wojtek J. Goscinski, Jeffrey S. Grethe, Jeanette Hellgren Kotaleski, Eric Tatt Wei Ho, David N. Kennedy, Linda J. Lanyon, Trygve B. Leergaard, Helen S. Mayberg, Luciano Milanesi, Roman Mouček, J. B. Poline, Prasun K. Roy, Stephen C. Strother, Tong Boon Tang, Paul Tiesinga, Thomas Wachtler, Daniel K. Wójcik, Maryann E. Martone
Excavating FAIR Data: the Case of the Multicenter Animal Spinal Cord Injury Study (MASCIS), Blood Pressure, and Neuro-Recovery
Carlos A. Almeida, Abel Torres-Espin, J. Russell Huie, Dongming Sun, Linda J. Noble-Haeusslein, Wise Young, Michael S. Beattie, Jacqueline C. Bresnahan, Jessica L. Nielson, Adam R. Ferguson
Biomarkers Based on Comprehensive Hierarchical EEG Coherence Analysis: Example Application to Social Competence in Autism (Preliminary Results)
Mo Modarres, David Cochran, David N. Kennedy, Richard Schmidt, Paula Fitzpatrick, Jean A. Frazier
A Comparative Analysis of MRI Automated Segmentation of Subcortical Brain Volumes in a Large Dataset of Elderly Subjects
Jaime Gomez-Ramirez, Javier Quilis-Sancho, Miguel A. Fernandez-Blazquez
Volume Reduction Techniques for the Classification of Independent Components of rs-fMRI Data: a Study with Convolutional Neural Networks
Leonel Mera Jiménez, John F. Ochoa Gómez
NeuroCrypt: Machine Learning Over Encrypted Distributed Neuroimaging Data
Nipuna Senanayake, Robert Podschwadt, Daniel Takabi, Vince D. Calhoun, Sergey M. Plis
Scan Once, Analyse Many: Using Large Open-Access Neuroimaging Datasets to Understand the Brain
Christopher R. Madan
The C-BIG Repository: an Institution-Level Open Science Platform
Samir Das, Rida Abou-Haidar, Henri Rabalais, Sonia Denise Lai Wing Sun, Zaliqa Rosli, Krishna Chatpar, Marie-Noëlle Boivin, Mahdieh Tabatabaei, Christine Rogers, Melanie Legault, Derek Lo, Clotilde Degroot, Alain Dagher, Stephanie O. M. Dyke, Thomas M. Durcan, Annabel Seyller, Julien Doyon, Viviane Poupon, Edward A. Fon, Angela Genge, Guy A. Rouleau, Jason Karamchandani, Alan C. Evans
Multiple Functional Brain Networks Related to Pain Perception Revealed by fMRI
Matteo Damascelli, Todd S. Woodward, Nicole Sanford, Hafsa B. Zahid, Ryan Lim, Alexander Scott, John K. Kramer
Automated Brain Masking of Fetal Functional MRI with Open Data
Saige Rutherford, Pascal Sturmfels, Mike Angstadt, Jasmine Hect, Jenna Wiens, Marion I. van den Heuvel, Dustin Scheinost, Chandra Sripada, Moriah Thomason
FAIRSCAPE: a Framework for FAIR and Reproducible Biomedical Analytics
Maxwell Adam Levinson, Justin Niestroy, Sadnan Al Manir, Karen Fairchild, Douglas E. Lake, J. Randall Moorman, Timothy Clark
Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org)
Abel Torres-Espín, Carlos A. Almeida, Austin Chou, J. Russell Huie, Michael Chiu, Romana Vavrek, Jeff Sacramento, Michael B. Orr, John C. Gensel, Jeffery S. Grethe, Maryann E. Martone, Karim Fouad, Adam R. Ferguson, Warren Alilain, Mark Bacon, Nicholas Batty, Michael Beattie, Jacqueline Bresnahan, Emily Burnside, Sarah Busch, Randall Carpenter, Isaac Francos Quijorna, Xiaohui Guo, Agnes Haggerty, Sarah Haroon, Jack Harris, Lyn Jakeman, Linda Jones, Naomi Kleitman, Timothy Kopper, Michael Lane, Francisco Magana, David Magnuson, Ines Maldonado, Verena May, Katelyn McFarlane, Kazuhito Morioka, Martin Oudega, Philip Leo Pascual, Jean-Baptiste Poline, Ephron Rosenzweig, Emma Schmidt, Wolfram Tetzlaff, Lana Zholudeva
A Comprehensive, FAIR File Format for Neuroanatomical Structure Modeling
A. E. Sullivan, S. J. Tappan, P. J. Angstman, A. Rodriguez, G. C. Thomas, D. M. Hoppes, M. A. Abdul-Karim, M. L. Heal, Jack R. Glaser
A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience
João P. G. Santos, Kadri Pajo, Daniel Trpevski, Andrey Stepaniuk, Olivia Eriksson, Anu G. Nair, Daniel Keller, Jeanette Hellgren Kotaleski, Andrei Kramer
ENIGMA + COINSTAC: Improving Findability, Accessibility, Interoperability, and Re-usability
Jessica A. Turner, Vince D. Calhoun, Paul M. Thompson, Neda Jahanshad, Christopher R. K. Ching, Sophia I. Thomopoulos, Eric Verner, Gregory P. Strauss, Anthony O. Ahmed, Matthew D. Turner, Sunitha Basodi, Judith M. Ford, Daniel H. Mathalon, Adrian Preda, Aysenil Belger, Bryon A. Mueller, Kelvin O. Lim, Theo G. M. van Erp
Validation Through Collaboration: Encouraging Team Efforts to Ensure Internal and External Validity of Computational Models of Biochemical Pathways
Richard Fitzpatrick, Melanie I. Stefan