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Erschienen in: Programming and Computer Software 4/2018

01.07.2018

Optimization Method for Cell Image Registration

verfasst von: F. A. Guryanov, A. S. Krylov

Erschienen in: Programming and Computer Software | Ausgabe 4/2018

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Abstract

Image registration problem often arises in microscopy when analyzing cell images. The most popular registration methods are rigid methods that use affine transformations. These methods are good enough for different types of images and image modalities, but they are very slow. This makes speed optimization techniques for these methods of particular importance. In this paper, we propose an algorithm for finding the optimal image downsampling coefficient to speedup image registration methods. The algorithm is tested for different rigid registration methods on HeLa cell images.

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Literatur
1.
Zurück zum Zitat Oliveira, F.P.M. and Tavares, J.M.R.S., Medical image registration: A review, Comput. Methods Biomech. Biomed. Eng., 2014, vol. 17, no. 2, pp. 73–94.CrossRef Oliveira, F.P.M. and Tavares, J.M.R.S., Medical image registration: A review, Comput. Methods Biomech. Biomed. Eng., 2014, vol. 17, no. 2, pp. 73–94.CrossRef
2.
Zurück zum Zitat Senyukova, O.V. and Zubov, A.Yu., Full anatomical labeling of magnetic resonance images of human brain by registration with multiple atlases, Program. Comput. Software, 2016, vol. 42, no. 6, pp. 356–360.MathSciNetCrossRef Senyukova, O.V. and Zubov, A.Yu., Full anatomical labeling of magnetic resonance images of human brain by registration with multiple atlases, Program. Comput. Software, 2016, vol. 42, no. 6, pp. 356–360.MathSciNetCrossRef
3.
Zurück zum Zitat Brown, L.G., A Survey of Image Registration Techniques, Columbia University, 1991, pp. 1–60. Brown, L.G., A Survey of Image Registration Techniques, Columbia University, 1991, pp. 1–60.
4.
Zurück zum Zitat Sorokin, D.V., Suchankova, J., Bartova, E., and Matula, P., Visualizing stable features in live cell nucleus for evaluation of the cell global motion compensation, Folia Biologica, 2014, vol. 60, pp. 45–49. Sorokin, D.V., Suchankova, J., Bartova, E., and Matula, P., Visualizing stable features in live cell nucleus for evaluation of the cell global motion compensation, Folia Biologica, 2014, vol. 60, pp. 45–49.
5.
Zurück zum Zitat Zhao, Y., Yao, R., Ouyang, L., Ding, H., Zhang, T., Zhang, K., Cheng, S., and Sun, W., Three-dimensional printing of Hela cells for cervical tumor model in vitro, Biofabrication, 2014, vol. 6, pp. 1–10. Zhao, Y., Yao, R., Ouyang, L., Ding, H., Zhang, T., Zhang, K., Cheng, S., and Sun, W., Three-dimensional printing of Hela cells for cervical tumor model in vitro, Biofabrication, 2014, vol. 6, pp. 1–10.
6.
Zurück zum Zitat Flusser, J. and Suk, T., A moment-based approach to registration of images with affine geometric distortion, IEEE Trans. Geosci. Remote Sens., 1994, vol. 32, no. 2, pp. 382–387.CrossRef Flusser, J. and Suk, T., A moment-based approach to registration of images with affine geometric distortion, IEEE Trans. Geosci. Remote Sens., 1994, vol. 32, no. 2, pp. 382–387.CrossRef
7.
Zurück zum Zitat Ashburner, J., A fast diffeomorphic image registration algorithm, NeuroImage, 2007, vol. 38, pp. 95–113.CrossRef Ashburner, J., A fast diffeomorphic image registration algorithm, NeuroImage, 2007, vol. 38, pp. 95–113.CrossRef
8.
Zurück zum Zitat Reddy, B.S. and Chatterji, B.N., An FFT-based technique for translation, rotation, and scale-invariant image registration, IEEE Trans. Image Process., 1996, vol. 5, no. 8, pp. 1266–1271.CrossRef Reddy, B.S. and Chatterji, B.N., An FFT-based technique for translation, rotation, and scale-invariant image registration, IEEE Trans. Image Process., 1996, vol. 5, no. 8, pp. 1266–1271.CrossRef
9.
Zurück zum Zitat Maes, F., Vandermeulen, D., and Suetens, P., Medical image registration using mutual information, Proc. Institute of Electrical and Electronics Engineers (IEEE), 2003, vol. 91, no. 10, pp. 1699–1722.CrossRef Maes, F., Vandermeulen, D., and Suetens, P., Medical image registration using mutual information, Proc. Institute of Electrical and Electronics Engineers (IEEE), 2003, vol. 91, no. 10, pp. 1699–1722.CrossRef
10.
Zurück zum Zitat Amintoosi, M., Fathy, M., and Mozayani, N., Precise image registration with structural similarity error measurement applied to superresolution, EURASIP J. Adv. Signal Process., 2009, pp. 23–30. Amintoosi, M., Fathy, M., and Mozayani, N., Precise image registration with structural similarity error measurement applied to superresolution, EURASIP J. Adv. Signal Process., 2009, pp. 23–30.
11.
Zurück zum Zitat Avants, B.B., Epstein, C.L., Grossman, M., and Gee, J.C., Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain, Med. Image Anal., 2008, vol. 12, no. 1, pp. 26–41.CrossRef Avants, B.B., Epstein, C.L., Grossman, M., and Gee, J.C., Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain, Med. Image Anal., 2008, vol. 12, no. 1, pp. 26–41.CrossRef
12.
Zurück zum Zitat Sitdikov, I., Guryanov, F., and Krylov, A.S., Accelerated mutual entropy maximization for biomedical image registration, Proc. Image Processing Theory, Tools, and Applications, 2015, pp. 337–340.CrossRef Sitdikov, I., Guryanov, F., and Krylov, A.S., Accelerated mutual entropy maximization for biomedical image registration, Proc. Image Processing Theory, Tools, and Applications, 2015, pp. 337–340.CrossRef
13.
Zurück zum Zitat Guryanov, F.A. and Krylov, A.S., Optimization of correlation methods for registration of biomedical images, Trudy 27-oi Mezhdunarodnoi konferentsii po komp’yuternoi grafike i mashinnomu zreniyu (Proc. 27th Int. Conf. Computer Graphics and Machine Vision), 2017, pp. 253–258. Guryanov, F.A. and Krylov, A.S., Optimization of correlation methods for registration of biomedical images, Trudy 27-oi Mezhdunarodnoi konferentsii po komp’yuternoi grafike i mashinnomu zreniyu (Proc. 27th Int. Conf. Computer Graphics and Machine Vision), 2017, pp. 253–258.
14.
Zurück zum Zitat Guryanov, F. and Krylov, A.S., Fast medical image registration using bidirectional empirical mode decomposition, Signal Process. Image Commun., 2017, vol. 59, pp. 12–17.CrossRef Guryanov, F. and Krylov, A.S., Fast medical image registration using bidirectional empirical mode decomposition, Signal Process. Image Commun., 2017, vol. 59, pp. 12–17.CrossRef
15.
Zurück zum Zitat Bhuiyan, S.M.A., Adhami, R.R., and Khan, J.F., A novel approach of fast and adaptive bidimensional empirical mode decomposition, IEEE Int. Conf. Acoustics, Speech, and Signal Processing, 2008, pp. 1313–1316. Bhuiyan, S.M.A., Adhami, R.R., and Khan, J.F., A novel approach of fast and adaptive bidimensional empirical mode decomposition, IEEE Int. Conf. Acoustics, Speech, and Signal Processing, 2008, pp. 1313–1316.
Metadaten
Titel
Optimization Method for Cell Image Registration
verfasst von
F. A. Guryanov
A. S. Krylov
Publikationsdatum
01.07.2018
Verlag
Pleiades Publishing
Erschienen in
Programming and Computer Software / Ausgabe 4/2018
Print ISSN: 0361-7688
Elektronische ISSN: 1608-3261
DOI
https://doi.org/10.1134/S0361768818040072

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