Skip to main content
Erschienen in: Medical & Biological Engineering & Computing 4/2019

28.11.2018 | ORIGINAL ARTICLE

Quantitative evaluation of fiber tractography with a Delaunay triangulation–based interpolation approach

verfasst von: Ines Ben Alaya, Majdi Jribi, Faouzi Ghorbel, Mokhtar Mars, Tarek Kraiem

Erschienen in: Medical & Biological Engineering & Computing | Ausgabe 4/2019

Einloggen

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

The recent challenge in high angular resolution diffusion imaging (HARDI) is to find a tractography process that provides information about the neural architecture within the white matter of the brain in a clinically feasible measurement time. The great success of the HARDI technique comes from its capability to overcome the problem of crossing fiber detection. However, it requires a large number of diffusion-weighted (DW) images which is problematic for clinical time and hardware. The main contribution of this paper is to develop a full tractography framework that gives an accurate estimate of the crossing fiber problem with the aim of reducing data acquisition time. We explore the interpolation in the gradient direction domain as a method to estimate the HARDI signal from a reduced set of DW images. The experimentation was performed in a first time on simulated data for a quantitative evaluation using the Tractometer system. We used, also, in vivo human brain data to demonstrate the potential of our pipeline. Results on both simulated and real data illustrate the effectiveness of our approach to perform the brain connectivity. Overall, we have shown that the proposed approach achieves competitive results to other tractography methods according to Tractometer connectivity metrics.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
1.
Zurück zum Zitat Mori S, Crain B, Chacko V, Zijl M V (1999) Three dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann Neurol 45:265–269CrossRefPubMed Mori S, Crain B, Chacko V, Zijl M V (1999) Three dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann Neurol 45:265–269CrossRefPubMed
2.
Zurück zum Zitat Basser P, Pajevic S, Pierpaoli C, Duda J, Aldroubi A (2000) In vivo fiber tractography using DTMRI data. Magn Reson Med 44:625–632CrossRefPubMed Basser P, Pajevic S, Pierpaoli C, Duda J, Aldroubi A (2000) In vivo fiber tractography using DTMRI data. Magn Reson Med 44:625–632CrossRefPubMed
3.
Zurück zum Zitat Golby A, Kindlmann G, Norton I, Yarmarkovich A, Pieper S, Kikinis R (2011) Interactive diffusion tensor tractography visualization for neurosurgical planning. Neurosurgery 68:469–505CrossRef Golby A, Kindlmann G, Norton I, Yarmarkovich A, Pieper S, Kikinis R (2011) Interactive diffusion tensor tractography visualization for neurosurgical planning. Neurosurgery 68:469–505CrossRef
4.
Zurück zum Zitat Clark C, Barrick T, Murphy M, Bell B (2003) White matter fiber tracking in patients with space-occupying lesions of the brain: A new technique for neurosurgical planning. NeuroImage 20:1601–1608CrossRefPubMed Clark C, Barrick T, Murphy M, Bell B (2003) White matter fiber tracking in patients with space-occupying lesions of the brain: A new technique for neurosurgical planning. NeuroImage 20:1601–1608CrossRefPubMed
5.
Zurück zum Zitat Mesaros S, Rocca M, Kacar K, Kostic J, Copetti M, Stosic-Opincal T, Filippi M (2012) Diffusion tensor MRI tractography and cognitive impairment in multiple sclerosis. Neurology 36:969–975CrossRef Mesaros S, Rocca M, Kacar K, Kostic J, Copetti M, Stosic-Opincal T, Filippi M (2012) Diffusion tensor MRI tractography and cognitive impairment in multiple sclerosis. Neurology 36:969–975CrossRef
6.
Zurück zum Zitat Wang Y, Sun P, Wang Q, Trinkaus K, Schmidt R, Naismith R, Anne H Differentiation and quantification of inflammation, demyelination and axon injury or loss in multiple sclerosis, Brain Advance Access published February 26 Wang Y, Sun P, Wang Q, Trinkaus K, Schmidt R, Naismith R, Anne H Differentiation and quantification of inflammation, demyelination and axon injury or loss in multiple sclerosis, Brain Advance Access published February 26
7.
Zurück zum Zitat Morikawa M, Kiuchi K, Taoka T, Nagauchi K, Kichikawa K, Kishimoto T (2010) Uncinate fasciculus-correlated cognition in Alzheimer’s disease: a diffusion tensor imaging study by tractography. Psychogeriatrics 1:15–20CrossRef Morikawa M, Kiuchi K, Taoka T, Nagauchi K, Kichikawa K, Kishimoto T (2010) Uncinate fasciculus-correlated cognition in Alzheimer’s disease: a diffusion tensor imaging study by tractography. Psychogeriatrics 1:15–20CrossRef
8.
Zurück zum Zitat Voineskos A, Lobaugh N, Bouix S, Rajji T, Miranda D, Kennedy J, Shenton M (2010) Diffusion tensor tractography findings in schizophrenia across the adult lifespan. Brain 5:1494–1504CrossRef Voineskos A, Lobaugh N, Bouix S, Rajji T, Miranda D, Kennedy J, Shenton M (2010) Diffusion tensor tractography findings in schizophrenia across the adult lifespan. Brain 5:1494–1504CrossRef
9.
Zurück zum Zitat Hagmann P, Jonasson L, Maeder P, Thiran J, Wedeen V, Meuli R (2006) understanding diffusion mr imaging techniques: from scalar diffusion-weighted imaging to diffusion tensor imaging and beyond. RadioGraphics 26:205–235CrossRef Hagmann P, Jonasson L, Maeder P, Thiran J, Wedeen V, Meuli R (2006) understanding diffusion mr imaging techniques: from scalar diffusion-weighted imaging to diffusion tensor imaging and beyond. RadioGraphics 26:205–235CrossRef
10.
Zurück zum Zitat Mori S (2007) Introduction to diffusion tensor imaging Mori S (2007) Introduction to diffusion tensor imaging
12.
Zurück zum Zitat Jeurissen B (2012) Improved analysis of brain connectivity using high angular resolution diffusion MRI, PhD thesis Jeurissen B (2012) Improved analysis of brain connectivity using high angular resolution diffusion MRI, PhD thesis
13.
Zurück zum Zitat Sotiropoulos S, Jbabdi S, Xu J, Andersson J, Moeller S, Auerbach E, Glasser M, Hernandez M, Sapiro G, Jenkinson M, Feinberg D, Yacoub E, Lenglet C, Essen D V, Ugurbil K, Behrens T (2013) Advances in diffusion MRI acquisition and processing in the Human Connectome Project. Neuroimage 80:125–143CrossRefPubMedPubMedCentral Sotiropoulos S, Jbabdi S, Xu J, Andersson J, Moeller S, Auerbach E, Glasser M, Hernandez M, Sapiro G, Jenkinson M, Feinberg D, Yacoub E, Lenglet C, Essen D V, Ugurbil K, Behrens T (2013) Advances in diffusion MRI acquisition and processing in the Human Connectome Project. Neuroimage 80:125–143CrossRefPubMedPubMedCentral
14.
Zurück zum Zitat Calabrese E, Badea A, Coe C, Lubach G, Styner M, Johnson G (2014) Investigating the tradeoffs between spatial resolution and diffusion sampling for brain mapping with diffusion tractography: Timewellspent. Human BrainMapping 2014:40–86 Calabrese E, Badea A, Coe C, Lubach G, Styner M, Johnson G (2014) Investigating the tradeoffs between spatial resolution and diffusion sampling for brain mapping with diffusion tractography: Timewellspent. Human BrainMapping 2014:40–86
15.
Zurück zum Zitat Tuch D, Belliveau J, Reese T, Wedeen V (1999) High angular resolution imaging of the human brain. In: Proceedings of the international society for the magnetic resonance in medicine, pp 321 Tuch D, Belliveau J, Reese T, Wedeen V (1999) High angular resolution imaging of the human brain. In: Proceedings of the international society for the magnetic resonance in medicine, pp 321
17.
Zurück zum Zitat Descoteaux M, Angelino E, Fitzgibbons S, Deriche R (2007) Regularized, fast, and robust analytical q-ball imaging. Magn Reson Med 58:497–510CrossRefPubMed Descoteaux M, Angelino E, Fitzgibbons S, Deriche R (2007) Regularized, fast, and robust analytical q-ball imaging. Magn Reson Med 58:497–510CrossRefPubMed
18.
Zurück zum Zitat Tournier J, Calamante F, Gadian D, Connelly A (2004) Direct estimation of the fiber orientation density function from diffusion- weighted MRI data using spherical deconvolution. Neuro-Image 23:1176–1185PubMed Tournier J, Calamante F, Gadian D, Connelly A (2004) Direct estimation of the fiber orientation density function from diffusion- weighted MRI data using spherical deconvolution. Neuro-Image 23:1176–1185PubMed
19.
Zurück zum Zitat Tournier J, Calamante F, Connelly A (2007) Robust determination of the fibre orientation distribution in diffusion MRI: nonnegativity constrained super-resolved spherical deconvolution. NeuroImage 35:1459–1472CrossRefPubMed Tournier J, Calamante F, Connelly A (2007) Robust determination of the fibre orientation distribution in diffusion MRI: nonnegativity constrained super-resolved spherical deconvolution. NeuroImage 35:1459–1472CrossRefPubMed
20.
Zurück zum Zitat Tournier J, Calamante F, Connelly A (2009) High How many diffusion gradient directions are required for HARDI? Proc ISMRM, pp 358 Tournier J, Calamante F, Connelly A (2009) High How many diffusion gradient directions are required for HARDI? Proc ISMRM, pp 358
21.
Zurück zum Zitat Michailovich O, Rathi Y (2010) Fast and accurate reconstruction of HARDI data using compressed sensing, Medical image computing and computer assisted intervention, Springer, pp 607–614 Michailovich O, Rathi Y (2010) Fast and accurate reconstruction of HARDI data using compressed sensing, Medical image computing and computer assisted intervention, Springer, pp 607–614
22.
Zurück zum Zitat Tristan-Vega A, Westin C (2011) Probabilistic ODF estimation from reduced HARDI data with sparse regularization, Medical image computing and computer assisted intervention, Springer, pp 182–190 Tristan-Vega A, Westin C (2011) Probabilistic ODF estimation from reduced HARDI data with sparse regularization, Medical image computing and computer assisted intervention, Springer, pp 182–190
23.
Zurück zum Zitat Daducci A, Ville D V D, Thiran J, Wiaux Y (2014) Sparse regularization for fiber ODF reconstruction: from the suboptimality of l2 and l1 priors to l0. Med Image Anal 6:820–833CrossRef Daducci A, Ville D V D, Thiran J, Wiaux Y (2014) Sparse regularization for fiber ODF reconstruction: from the suboptimality of l2 and l1 priors to l0. Med Image Anal 6:820–833CrossRef
24.
Zurück zum Zitat Sepehrband F, Choupan J, Caruyer E, Kurniawan N, Gal Y Lop- DWI: A novel scheme for pre-processing of diffusion weighted images in the gradient direction domain, Frontiers in Neurology 5 Sepehrband F, Choupan J, Caruyer E, Kurniawan N, Gal Y Lop- DWI: A novel scheme for pre-processing of diffusion weighted images in the gradient direction domain, Frontiers in Neurology 5
25.
Zurück zum Zitat Bates A, Khalid Z, Kennedy R (2016) On the use of antipodal optimal dimensionality sampling scheme on the sphere for recovering intra-voxel fibre structure in diffusion MRI. In: Fuster A, Ghosh A, Kaden E, Rathi Y, Reisert M (eds) Computational diffusion MRI mathematics and visualization. Springer, Cham Bates A, Khalid Z, Kennedy R (2016) On the use of antipodal optimal dimensionality sampling scheme on the sphere for recovering intra-voxel fibre structure in diffusion MRI. In: Fuster A, Ghosh A, Kaden E, Rathi Y, Reisert M (eds) Computational diffusion MRI mathematics and visualization. Springer, Cham
26.
Zurück zum Zitat Cho K, Yeh C, Chao Y, Chen J W J, Lin C (2009) Potential in reducing scan times of HARDI by accurate correction of the cross-term in a hemispherical encoding scheme. J Magn Reson Imaging 29:1386–1394CrossRefPubMed Cho K, Yeh C, Chao Y, Chen J W J, Lin C (2009) Potential in reducing scan times of HARDI by accurate correction of the cross-term in a hemispherical encoding scheme. J Magn Reson Imaging 29:1386–1394CrossRefPubMed
27.
Zurück zum Zitat Tao X, Miller J (2006) A method for registering diffusion weighted magnetic resonance images. Proc MICCAI 4191:594–602 Tao X, Miller J (2006) A method for registering diffusion weighted magnetic resonance images. Proc MICCAI 4191:594–602
28.
Zurück zum Zitat Coup P, Manjn J, Chamberland M, Descoteaux M, Hiba B (2013) Collaborative patchbased super-resolution for diffusion-weighted images. Neuroimage 83:245–261CrossRef Coup P, Manjn J, Chamberland M, Descoteaux M, Hiba B (2013) Collaborative patchbased super-resolution for diffusion-weighted images. Neuroimage 83:245–261CrossRef
29.
Zurück zum Zitat Dyrby T, Lundell H, Burke M, Reislev N, Paulsona M P O B, Siebner H (2014) Interpolation of diffusion weighted imaging datasets. Neuroimage 103:202–213CrossRefPubMed Dyrby T, Lundell H, Burke M, Reislev N, Paulsona M P O B, Siebner H (2014) Interpolation of diffusion weighted imaging datasets. Neuroimage 103:202–213CrossRefPubMed
30.
Zurück zum Zitat Yap P, An H, Chen Y, Shen D (2014) Fiber-driven resolution enhancement of diffusion-weighted images. Neuroimage 84:939–950CrossRefPubMed Yap P, An H, Chen Y, Shen D (2014) Fiber-driven resolution enhancement of diffusion-weighted images. Neuroimage 84:939–950CrossRefPubMed
31.
Zurück zum Zitat Carfora M (2007) Interpolation on spherical geodesic grids: a comparative study. J Comput Appl Math 210:99–105CrossRef Carfora M (2007) Interpolation on spherical geodesic grids: a comparative study. J Comput Appl Math 210:99–105CrossRef
32.
Zurück zum Zitat BenAlaya I, Jribi M, Ghorbel F, SappeyMarinier D, Kraiem T (2017) Fast and accurate estimation of the HARDI signal in diffusion MRI using a nearest-neighbor interpolation approach. Innovation and Research in BioMedical engineering (IRBM) 38:156–166 BenAlaya I, Jribi M, Ghorbel F, SappeyMarinier D, Kraiem T (2017) Fast and accurate estimation of the HARDI signal in diffusion MRI using a nearest-neighbor interpolation approach. Innovation and Research in BioMedical engineering (IRBM) 38:156–166
33.
Zurück zum Zitat Cheng J, Yap P, Shen D (2014) Single and multiple shell sampling design in dMRI using spherical code and mixed integer linear programming, ISMRM, pp 2558 Cheng J, Yap P, Shen D (2014) Single and multiple shell sampling design in dMRI using spherical code and mixed integer linear programming, ISMRM, pp 2558
34.
Zurück zum Zitat Descoteaux M, Wiest-Daessl N, Prima S, Barillot C, Deriche R (2008) Impact of Rician adapted Non-Local Means filtering on HARDI. Medical image computing and computer-assisted intervention: MICCAI 11:122–301PubMed Descoteaux M, Wiest-Daessl N, Prima S, Barillot C, Deriche R (2008) Impact of Rician adapted Non-Local Means filtering on HARDI. Medical image computing and computer-assisted intervention: MICCAI 11:122–301PubMed
35.
Zurück zum Zitat BenAlaya I, Jribi M, Ghorbel F, Kraiem T (2016) A novel geometrical approach for a rapid estimation of the HARDI signal in diffusion MRI. International Conference on Image and Signal Processing-ICISP 9680:253–261CrossRef BenAlaya I, Jribi M, Ghorbel F, Kraiem T (2016) A novel geometrical approach for a rapid estimation of the HARDI signal in diffusion MRI. International Conference on Image and Signal Processing-ICISP 9680:253–261CrossRef
36.
Zurück zum Zitat Tournier J, Calamante F, Connelly A (2012) MRtrix: diffusion tractography in crossing fiber regions. Int J Imaging Syst Technol 22:53–66CrossRef Tournier J, Calamante F, Connelly A (2012) MRtrix: diffusion tractography in crossing fiber regions. Int J Imaging Syst Technol 22:53–66CrossRef
37.
Zurück zum Zitat Descoteaux M, Deriche R, Knsche T, Anwander A (2009) Deterministic and probabilistic tractography based on complex fibre orientation distributions. IEEE Trans Med Imaging 28:269–286CrossRefPubMed Descoteaux M, Deriche R, Knsche T, Anwander A (2009) Deterministic and probabilistic tractography based on complex fibre orientation distributions. IEEE Trans Med Imaging 28:269–286CrossRefPubMed
38.
Zurück zum Zitat Berman J, Chung S, Mukherjee P, Hess CP, Han E, Henry R (2008) Probabilistic streamline q-ball tractography using the residual bootstrap. Neuroimage 39:625–632CrossRef Berman J, Chung S, Mukherjee P, Hess CP, Han E, Henry R (2008) Probabilistic streamline q-ball tractography using the residual bootstrap. Neuroimage 39:625–632CrossRef
39.
Zurück zum Zitat Neher P, Laun F, Stieltjes B, Maier-Hein K (2014) Fiberfox: facilitating the creation of realistic white matter software phantoms. MRM 72:1460–1470CrossRefPubMed Neher P, Laun F, Stieltjes B, Maier-Hein K (2014) Fiberfox: facilitating the creation of realistic white matter software phantoms. MRM 72:1460–1470CrossRefPubMed
40.
Zurück zum Zitat Maier-Hein K, Neher P, Houde C, Ct M, Garyfallidis E et al The challenge of mapping the human connectome based on diffusion tractography, Nature Communications, Nature Publishing Group 1 Maier-Hein K, Neher P, Houde C, Ct M, Garyfallidis E et al The challenge of mapping the human connectome based on diffusion tractography, Nature Communications, Nature Publishing Group 1
41.
Zurück zum Zitat Ct M, Girard G, Bor A, Garyfallidis E, Houde J, Descoteaux M (2013) Tractometer: Towards validation of tractography pipelines. Med Image Anal 17:857–844 Ct M, Girard G, Bor A, Garyfallidis E, Houde J, Descoteaux M (2013) Tractometer: Towards validation of tractography pipelines. Med Image Anal 17:857–844
42.
Zurück zum Zitat Tuch D, Reese T, Wiegell M, Makris N, Belliveau J, Wedeen V (2002) High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity. Magn Reson Med 48:577–582CrossRefPubMed Tuch D, Reese T, Wiegell M, Makris N, Belliveau J, Wedeen V (2002) High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity. Magn Reson Med 48:577–582CrossRefPubMed
43.
Zurück zum Zitat Tournier J, Calamante F, Connelly A (2013) Determination of the appropriate b value and number of gradient directions for high angular resolution diffusion-weighted imaging. NMR in Biomedecine 26:1775–1786CrossRef Tournier J, Calamante F, Connelly A (2013) Determination of the appropriate b value and number of gradient directions for high angular resolution diffusion-weighted imaging. NMR in Biomedecine 26:1775–1786CrossRef
44.
Zurück zum Zitat Zhang H, Gao Z, Xu L, Yu X, Wong K, Liu H, Zhuang L, Shi P (2018) A meshfree representation for cardiac medical image computing. IEEE J Transl Eng Health Med 6:1800212PubMed Zhang H, Gao Z, Xu L, Yu X, Wong K, Liu H, Zhuang L, Shi P (2018) A meshfree representation for cardiac medical image computing. IEEE J Transl Eng Health Med 6:1800212PubMed
45.
Zurück zum Zitat Wang X, Chen T, Zhang S, Schaerer J, Qian Z, Huh S, Metaxas D, Axel L (2015) Meshless deformable models for 3D cardiac motion and strain analysis from tagged MRI. Magn Reson Imaging 33:146–160CrossRefPubMed Wang X, Chen T, Zhang S, Schaerer J, Qian Z, Huh S, Metaxas D, Axel L (2015) Meshless deformable models for 3D cardiac motion and strain analysis from tagged MRI. Magn Reson Imaging 33:146–160CrossRefPubMed
46.
Zurück zum Zitat Mori S, van Zijl PC (2002) Fiber tracking: principles and strategies - a technical review. NMR Biomed 15:468–480CrossRefPubMed Mori S, van Zijl PC (2002) Fiber tracking: principles and strategies - a technical review. NMR Biomed 15:468–480CrossRefPubMed
47.
Zurück zum Zitat Wedeen V J, Wang R P, Schmahmann J D, Benner T, Tseng W Y I, Dai G, de Crespigny AJ (2008) Diffusion spectrum magnetic resonance imaging (DSI) tractography of crossing fibers. Neuroimage 41:1267–1277CrossRefPubMed Wedeen V J, Wang R P, Schmahmann J D, Benner T, Tseng W Y I, Dai G, de Crespigny AJ (2008) Diffusion spectrum magnetic resonance imaging (DSI) tractography of crossing fibers. Neuroimage 41:1267–1277CrossRefPubMed
48.
Zurück zum Zitat Jäger J, Klein A, Buhmann M, Skrandies W (2016) Reconstruction of electroencephalographic data using radial basis functions. Clin Neurophysiol 2016:1978–1983CrossRef Jäger J, Klein A, Buhmann M, Skrandies W (2016) Reconstruction of electroencephalographic data using radial basis functions. Clin Neurophysiol 2016:1978–1983CrossRef
Metadaten
Titel
Quantitative evaluation of fiber tractography with a Delaunay triangulation–based interpolation approach
verfasst von
Ines Ben Alaya
Majdi Jribi
Faouzi Ghorbel
Mokhtar Mars
Tarek Kraiem
Publikationsdatum
28.11.2018
Verlag
Springer Berlin Heidelberg
Erschienen in
Medical & Biological Engineering & Computing / Ausgabe 4/2019
Print ISSN: 0140-0118
Elektronische ISSN: 1741-0444
DOI
https://doi.org/10.1007/s11517-018-1932-y

Weitere Artikel der Ausgabe 4/2019

Medical & Biological Engineering & Computing 4/2019 Zur Ausgabe

Premium Partner