Skip to main content

2017 | Supplement | Buchkapitel

Statistical Shape Model of Nested Structures Based on the Level Set

verfasst von : Atsushi Saito, Masaki Tsujikawa, Tetsuya Takakuwa, Shigehito Yamada, Akinobu Shimizu

Erschienen in: Medical Image Computing and Computer Assisted Intervention − MICCAI 2017

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

We propose a method for constructing a multi-shape statistical shape model (SSM) for nested structures such that each is a subset or superset of another. The proposed method has potential application to any pair of shapes with an inclusive relationship. These types of shapes are often found in anatomy such as the brain and ventricle. Most existing multi-shape SSMs can be used to describe these nested shapes; however, none of them guarantees a correct inclusive relationship. The basic concept of the proposed method is to describe nested shapes by applying different thresholds to a single continuous real-valued function in an image space. We demonstrate that there exists a one-to-one mapping from an arbitrary pair of nested shapes to this type of function. We also demonstrate that this method can be easily extended to represent three or more nested structures. We demonstrate the effectiveness of proposed SSM using brain and ventricle volumes obtained from particular stages of human embryos. The performance of the SSM was evaluated in terms of generalization and specificity ability. Additionally, we measured leakage criteria to assess the ability to preserve inclusive relationships. A quantitative comparison of our SSM with conventional multi-shape SSMs demonstrates the superiority of the proposed method.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
1.
Zurück zum Zitat Heimann, T., Meinzer, H.P.: Statistical shape models for 3D medical image segmentation: a review. Med. Image Anal. 13(4), 543–563 (2009)CrossRef Heimann, T., Meinzer, H.P.: Statistical shape models for 3D medical image segmentation: a review. Med. Image Anal. 13(4), 543–563 (2009)CrossRef
2.
Zurück zum Zitat Cootes, T.F., Taylor, C.J., Cooper, D.H., Graham, J.: Active shape models-their training and application. Comput. Vis. Image Underst. 61(1), 38–59 (1995)CrossRef Cootes, T.F., Taylor, C.J., Cooper, D.H., Graham, J.: Active shape models-their training and application. Comput. Vis. Image Underst. 61(1), 38–59 (1995)CrossRef
3.
Zurück zum Zitat Cremers, D., Rousson, M., Deriche, R.: A review of statistical approaches to level set segmentation: integrating color, texture, motion and shape. Int. J. Comput. Vis. 72(2), 195–215 (2007)CrossRef Cremers, D., Rousson, M., Deriche, R.: A review of statistical approaches to level set segmentation: integrating color, texture, motion and shape. Int. J. Comput. Vis. 72(2), 195–215 (2007)CrossRef
4.
Zurück zum Zitat Okada, T., Linguraru, M.G., Hori, M., Summers, R.M., Tomiyama, N., Sato, Y.: Abdominal multi-organ segmentation from CT images using conditional shape-location and unsupervised intensity priors. Med. Image Anal. 26(1), 1–18 (2015)CrossRef Okada, T., Linguraru, M.G., Hori, M., Summers, R.M., Tomiyama, N., Sato, Y.: Abdominal multi-organ segmentation from CT images using conditional shape-location and unsupervised intensity priors. Med. Image Anal. 26(1), 1–18 (2015)CrossRef
5.
Zurück zum Zitat Tsai, A., Wells, W., Tempany, C., Grimson, E., Willsky, A.: Mutual information in coupled multi-shape model for medical image segmentation. Med. Image Anal. 8(4), 429–445 (2004)CrossRef Tsai, A., Wells, W., Tempany, C., Grimson, E., Willsky, A.: Mutual information in coupled multi-shape model for medical image segmentation. Med. Image Anal. 8(4), 429–445 (2004)CrossRef
6.
Zurück zum Zitat Jing, Y., Staib, L.H., Duncan, J.S.: Neighbor-constrained segmentation with level set based 3-D deformable models. IEEE Trans. Med. Imaging 23(8), 940–948 (2004)CrossRef Jing, Y., Staib, L.H., Duncan, J.S.: Neighbor-constrained segmentation with level set based 3-D deformable models. IEEE Trans. Med. Imaging 23(8), 940–948 (2004)CrossRef
7.
Zurück zum Zitat Pohl, K.M., Fisher, J., Bouix, S., Shenton, M., McCarley, R.W., Grimson, W.E.L., Kikinis, R., Wells, W.M.: Using the logarithm of odds to define a vector space on probabilistic atlases. Med. Image Anal. 11(5), 465–477 (2007)CrossRef Pohl, K.M., Fisher, J., Bouix, S., Shenton, M., McCarley, R.W., Grimson, W.E.L., Kikinis, R., Wells, W.M.: Using the logarithm of odds to define a vector space on probabilistic atlases. Med. Image Anal. 11(5), 465–477 (2007)CrossRef
8.
Zurück zum Zitat Malcolm, J., Rathi, Y., Shenton, M.E., Tannenbaum, A.: Label space: a coupled multi-shape representation. In: Metaxas, D., Axel, L., Fichtinger, G., Székely, G. (eds.) MICCAI 2008. LNCS, vol. 5242, pp. 416–424. Springer, Heidelberg (2008). doi:10.1007/978-3-540-85990-1_50CrossRef Malcolm, J., Rathi, Y., Shenton, M.E., Tannenbaum, A.: Label space: a coupled multi-shape representation. In: Metaxas, D., Axel, L., Fichtinger, G., Székely, G. (eds.) MICCAI 2008. LNCS, vol. 5242, pp. 416–424. Springer, Heidelberg (2008). doi:10.​1007/​978-3-540-85990-1_​50CrossRef
9.
Zurück zum Zitat Changizi, N., Hamarneh, G.: Probabilistic multi-shape representation using an isometric log-ratio mapping. In: Jiang, T., Navab, N., Pluim, J.P.W., Viergever, M.A. (eds.) MICCAI 2010. LNCS, vol. 6363, pp. 563–570. Springer, Heidelberg (2010). doi:10.1007/978-3-642-15711-0_70CrossRef Changizi, N., Hamarneh, G.: Probabilistic multi-shape representation using an isometric log-ratio mapping. In: Jiang, T., Navab, N., Pluim, J.P.W., Viergever, M.A. (eds.) MICCAI 2010. LNCS, vol. 6363, pp. 563–570. Springer, Heidelberg (2010). doi:10.​1007/​978-3-642-15711-0_​70CrossRef
10.
Zurück zum Zitat Frangi, A.F., Rueckert, D., Schnabel, J.A., Niessen, W.J.: Automatic construction of multiple-object three-dimensional statistical shape models: application to cardiac modeling. IEEE Trans. Med. Imaging 21(9), 1151–1166 (2002)CrossRef Frangi, A.F., Rueckert, D., Schnabel, J.A., Niessen, W.J.: Automatic construction of multiple-object three-dimensional statistical shape models: application to cardiac modeling. IEEE Trans. Med. Imaging 21(9), 1151–1166 (2002)CrossRef
11.
12.
Zurück zum Zitat Liu, Y., Captur, G., Moon, J.C., Guo, S., Yang, X., Zhang, S., Li, C.: Distance regularized two level sets for segmentation of left and right ventricles from cine-MRI. Magn. Reson. Imaging 34(5), 699–706 (2016)CrossRef Liu, Y., Captur, G., Moon, J.C., Guo, S., Yang, X., Zhang, S., Li, C.: Distance regularized two level sets for segmentation of left and right ventricles from cine-MRI. Magn. Reson. Imaging 34(5), 699–706 (2016)CrossRef
13.
Zurück zum Zitat Saito, T., Toriwaki, J.I.: New algorithms for euclidean distance transformation of an n-dimensional digitized picture with applications. Pattern Recogn. 27(11), 1551–1565 (1994)CrossRef Saito, T., Toriwaki, J.I.: New algorithms for euclidean distance transformation of an n-dimensional digitized picture with applications. Pattern Recogn. 27(11), 1551–1565 (1994)CrossRef
14.
Zurück zum Zitat Koenderink, J.J., van Doorn, A.J.: Surface shape and curvature scales. Image Vis. Comput. 10(8), 557–564 (1992)CrossRef Koenderink, J.J., van Doorn, A.J.: Surface shape and curvature scales. Image Vis. Comput. 10(8), 557–564 (1992)CrossRef
15.
Zurück zum Zitat Kameda, T., Yamada, S., Uwabe, C., Suganuma, N.: Digitization of clinical and epidemiological data from the Kyoto Collection of human embryos: maternal risk factors and embryonic malformations. Congenit. Anom. 52(1), 48–54 (2012)CrossRef Kameda, T., Yamada, S., Uwabe, C., Suganuma, N.: Digitization of clinical and epidemiological data from the Kyoto Collection of human embryos: maternal risk factors and embryonic malformations. Congenit. Anom. 52(1), 48–54 (2012)CrossRef
16.
Zurück zum Zitat Matsuda, Y., Ono, S., Otake, Y., Handa, S., Kose, K., Haishi, T., Yamada, S., Uwabe, C., Shiota, K.: Imaging of a large collection of human embryo using a super-parallel MR microscope. Magn. Reson. Med. Sci. 6(3), 139–146 (2007)CrossRef Matsuda, Y., Ono, S., Otake, Y., Handa, S., Kose, K., Haishi, T., Yamada, S., Uwabe, C., Shiota, K.: Imaging of a large collection of human embryo using a super-parallel MR microscope. Magn. Reson. Med. Sci. 6(3), 139–146 (2007)CrossRef
17.
Zurück zum Zitat Nakashima, T., Hirose, A., Yamada, S., Uwabe, C., Kose, K., Takakuwa, T.: Morphometric analysis of the brain vesicles during the human embryonic period by magnetic resonance microscopic imaging. Congen. Anom. 52(1), 55–58 (2012)CrossRef Nakashima, T., Hirose, A., Yamada, S., Uwabe, C., Kose, K., Takakuwa, T.: Morphometric analysis of the brain vesicles during the human embryonic period by magnetic resonance microscopic imaging. Congen. Anom. 52(1), 55–58 (2012)CrossRef
18.
Zurück zum Zitat Styner, M.A., Rajamani, K.T., Nolte, L.-P., Zsemlye, G., Székely, G., Taylor, C.J., Davies, R.H.: Evaluation of 3D correspondence methods for model building. In: Taylor, C., Noble, J.A. (eds.) IPMI 2003. LNCS, vol. 2732, pp. 63–75. Springer, Heidelberg (2003). doi:10.1007/978-3-540-45087-0_6CrossRef Styner, M.A., Rajamani, K.T., Nolte, L.-P., Zsemlye, G., Székely, G., Taylor, C.J., Davies, R.H.: Evaluation of 3D correspondence methods for model building. In: Taylor, C., Noble, J.A. (eds.) IPMI 2003. LNCS, vol. 2732, pp. 63–75. Springer, Heidelberg (2003). doi:10.​1007/​978-3-540-45087-0_​6CrossRef
Metadaten
Titel
Statistical Shape Model of Nested Structures Based on the Level Set
verfasst von
Atsushi Saito
Masaki Tsujikawa
Tetsuya Takakuwa
Shigehito Yamada
Akinobu Shimizu
Copyright-Jahr
2017
DOI
https://doi.org/10.1007/978-3-319-66182-7_20

Premium Partner