Skip to main content

2017 | Supplement | Buchkapitel

Subject-Specific Structural Parcellations Based on Randomized AB-divergences

verfasst von : Nicolas Honnorat, Drew Parker, Birkan Tunç, Christos Davatzikos, Ragini Verma

Erschienen in: Medical Image Computing and Computer Assisted Intervention − MICCAI 2017

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Brain parcellation provides a means to approach the brain in smaller regions. It also affords an appropriate dimensionality reduction in the creation of connectomes. Most approaches to creating connectomes start with registering individual scans to a template, which is then parcellated. Data processing usually ends with the projection of individual scans onto the parcellation for extracting individual biomarkers, such as connectivity signatures. During this process, registration errors can significantly alter the quality of biomarkers. In this paper, we propose to mitigate this issue with a hybrid approach for brain parcellation. We use diffusion MRI (dMRI) based structural connectivity measures to drive the refinement of an anatomical prior parcellation. Our method generates highly coherent structural parcels in native subject space while maintaining interpretability and correspondences across the population. This goal is achieved by registering a population-wide anatomical prior to individual dMRI scan and generating connectivity signatures for each voxel. The anatomical prior is then deformed by re-parcellating the brain according to the similarity between voxel connectivity signatures while constraining the number of parcels. We investigate a broad family of signature similarities known as AB-divergences and explain how a divergence adapted to our segmentation task can be selected. This divergence is used for parcellating a high-resolution dataset using two graph-based methods. The promising results obtained suggest that our approach produces coherent parcels and stronger connectomes than the original anatomical priors.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
1.
Zurück zum Zitat Behrens, T., Berg, H., Jbabdi, S., Rushworth, M., Woolrich, M.: Probabilistic diffusion tractography with multiple fibre orientations: what can we gain? Neuroimage 34(1), 144–155 (2007)CrossRef Behrens, T., Berg, H., Jbabdi, S., Rushworth, M., Woolrich, M.: Probabilistic diffusion tractography with multiple fibre orientations: what can we gain? Neuroimage 34(1), 144–155 (2007)CrossRef
2.
Zurück zum Zitat Bullmore, S.: Complex brain networks: graph theoretical analysis of structural and functional systems. Nat. Rev. Neurosci. 10, 186–198 (2009)CrossRef Bullmore, S.: Complex brain networks: graph theoretical analysis of structural and functional systems. Nat. Rev. Neurosci. 10, 186–198 (2009)CrossRef
3.
Zurück zum Zitat Cichocki, C.: Amari: Generalized alpha-beta divergences and their application to robust nonnegative matrix factorization. Entropy 13, 134–170 (2011)CrossRef Cichocki, C.: Amari: Generalized alpha-beta divergences and their application to robust nonnegative matrix factorization. Entropy 13, 134–170 (2011)CrossRef
4.
Zurück zum Zitat Clarkson, M.J., Malone, I.B., Modat, M., Leung, K.K., Ryan, N., Alexander, D.C., Fox, N.C., Ourselin, S.: A framework for using diffusion weighted imaging to improve cortical parcellation. In: Jiang, T., Navab, N., Pluim, J.P.W., Viergever, M.A. (eds.) MICCAI 2010. LNCS, vol. 6361, pp. 534–541. Springer, Heidelberg (2010). doi:10.1007/978-3-642-15705-9_65CrossRef Clarkson, M.J., Malone, I.B., Modat, M., Leung, K.K., Ryan, N., Alexander, D.C., Fox, N.C., Ourselin, S.: A framework for using diffusion weighted imaging to improve cortical parcellation. In: Jiang, T., Navab, N., Pluim, J.P.W., Viergever, M.A. (eds.) MICCAI 2010. LNCS, vol. 6361, pp. 534–541. Springer, Heidelberg (2010). doi:10.​1007/​978-3-642-15705-9_​65CrossRef
5.
Zurück zum Zitat Dale, A., Fischl, B., Sereno, M.: Cortical surface-based analysis. I. Segmentation and surface reconstruction. Neuroimage 9, 179–194 (1999)CrossRef Dale, A., Fischl, B., Sereno, M.: Cortical surface-based analysis. I. Segmentation and surface reconstruction. Neuroimage 9, 179–194 (1999)CrossRef
6.
Zurück zum Zitat Desikan, R., Segonne, F., Fischl, B., Quinn, B., Dickerson, B., Blacker, D., Buckner, R., Dale, A., Maguire, R., Hyman, B., Albert, M., Killiany, R.: An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. Neuroimage 31(3), 968–980 (2006)CrossRef Desikan, R., Segonne, F., Fischl, B., Quinn, B., Dickerson, B., Blacker, D., Buckner, R., Dale, A., Maguire, R., Hyman, B., Albert, M., Killiany, R.: An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. Neuroimage 31(3), 968–980 (2006)CrossRef
7.
Zurück zum Zitat Fredman, M., Tarjan, R.: Fibonacci heaps and their uses in improved network optimization algorithms. J. Assoc. Comput. Mach. 34(3), 596–615 (1987)MathSciNetCrossRef Fredman, M., Tarjan, R.: Fibonacci heaps and their uses in improved network optimization algorithms. J. Assoc. Comput. Mach. 34(3), 596–615 (1987)MathSciNetCrossRef
8.
Zurück zum Zitat Gallardo, G., Wells III., W., Deriche, R., Wassermann, D.: Groupwise structural parcellation of the whole cortex: A logistic random effects model based approach. Neuroimage (2017, in press) Gallardo, G., Wells III., W., Deriche, R., Wassermann, D.: Groupwise structural parcellation of the whole cortex: A logistic random effects model based approach. Neuroimage (2017, in press)
9.
Zurück zum Zitat Gordon, E., Laumann, T., Adeyemo, B., Huckins, J., Kelley, W., Petersen, S.: Generation and evaluation of a cortical area parcellation from resting-state correlations. Cereb. Cortex 26, 288–303 (2014)CrossRef Gordon, E., Laumann, T., Adeyemo, B., Huckins, J., Kelley, W., Petersen, S.: Generation and evaluation of a cortical area parcellation from resting-state correlations. Cereb. Cortex 26, 288–303 (2014)CrossRef
10.
Zurück zum Zitat Halko, N., Martinsson, P., Tropp, J.A.: Finding structure with randomness: probabilistic algorithms for constructing approximate matrix decompositions. SIAM Rev. 53(2), 217–288 (2011)MathSciNetCrossRef Halko, N., Martinsson, P., Tropp, J.A.: Finding structure with randomness: probabilistic algorithms for constructing approximate matrix decompositions. SIAM Rev. 53(2), 217–288 (2011)MathSciNetCrossRef
11.
Zurück zum Zitat Honnorat, N., Satterthwaite, T., Gur, R., Gur, R., Davatzikos, C.: sGraSP: a graph-based method for the derivation of subject-specific functional parcellations of the brain. J. Neurosci. Methods 227, 1–20 (2017)CrossRef Honnorat, N., Satterthwaite, T., Gur, R., Gur, R., Davatzikos, C.: sGraSP: a graph-based method for the derivation of subject-specific functional parcellations of the brain. J. Neurosci. Methods 227, 1–20 (2017)CrossRef
12.
Zurück zum Zitat Hubert, L., Arabie, P.: Comparing partitions. J. Classif. 2, 193–218 (1985)CrossRef Hubert, L., Arabie, P.: Comparing partitions. J. Classif. 2, 193–218 (1985)CrossRef
13.
Zurück zum Zitat Ingalhalikar, M., Smith, A., Parker, D., Satterthwaite, T., Elliott, M., Ruparel, K., Hakonarson, H., Gur, R., Gur, R., Verma, R.: Sex differences in the structural connectome of the human brain. Proc. Natl. Acad. Sci. 111(2), 823–828 (2014)CrossRef Ingalhalikar, M., Smith, A., Parker, D., Satterthwaite, T., Elliott, M., Ruparel, K., Hakonarson, H., Gur, R., Gur, R., Verma, R.: Sex differences in the structural connectome of the human brain. Proc. Natl. Acad. Sci. 111(2), 823–828 (2014)CrossRef
14.
Zurück zum Zitat Mars, R., Jbabdi, S., Sallet, J., O’Reilly, J., Croxson, P., Olivier, E., Noonan, M., Bergmann, C., Mitchell, A.S., Baxter, M., Behrens, T., Johansen-Berg, H., Tomassini, V., Miller, K., Rushworth, M.: Diffusion-weighted imaging tractography-based parcellation of the human parietal cortex and comparison with human and macaque resting-state functional connectivity. J. Neurosci. 31(11), 4087–4100 (2011)CrossRef Mars, R., Jbabdi, S., Sallet, J., O’Reilly, J., Croxson, P., Olivier, E., Noonan, M., Bergmann, C., Mitchell, A.S., Baxter, M., Behrens, T., Johansen-Berg, H., Tomassini, V., Miller, K., Rushworth, M.: Diffusion-weighted imaging tractography-based parcellation of the human parietal cortex and comparison with human and macaque resting-state functional connectivity. J. Neurosci. 31(11), 4087–4100 (2011)CrossRef
15.
Zurück zum Zitat Parisot, S., Arslan, S., Passerat-Palmbach, J., Wells, W., Rueckert, D.: Group-wise parcellation of the cortex through multi-scale spectral clustering. NeuroImage 136, 68–83 (2016)CrossRef Parisot, S., Arslan, S., Passerat-Palmbach, J., Wells, W., Rueckert, D.: Group-wise parcellation of the cortex through multi-scale spectral clustering. NeuroImage 136, 68–83 (2016)CrossRef
16.
Zurück zum Zitat Tunç, B., Parker, W.A., Ingalhalikar, M., Verma, R.: Automated tract extraction via atlas based adaptive clustering. Neuroimage 102(2), 596–607 (2014)CrossRef Tunç, B., Parker, W.A., Ingalhalikar, M., Verma, R.: Automated tract extraction via atlas based adaptive clustering. Neuroimage 102(2), 596–607 (2014)CrossRef
Metadaten
Titel
Subject-Specific Structural Parcellations Based on Randomized AB-divergences
verfasst von
Nicolas Honnorat
Drew Parker
Birkan Tunç
Christos Davatzikos
Ragini Verma
Copyright-Jahr
2017
DOI
https://doi.org/10.1007/978-3-319-66182-7_47

Premium Partner