Skip to main content
Erschienen in: Clean Technologies and Environmental Policy 1/2007

01.02.2007 | Original Paper

Bioprospecting of organisms from the deep sea: scientific and environmental aspects

verfasst von: Marianne Synnes

Erschienen in: Clean Technologies and Environmental Policy | Ausgabe 1/2007

Einloggen

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Accelerating technological development has made it possible for humans to reach to one of the most remote parts of the Earth, the deepest areas of the sea, also called the Earth’s last frontier. Rare, previously hidden ecosystems with vast biological diversity can be found here. These communities and their inhabitants are starting to feel the pressure of human impact, being regarded as having an enormous potential in the development of new products such as pharmaceuticals, molecular probes, enzymes, cosmetics, nutritional supplements, and agrichemicals. However, compared to the bioprospecting activity of these areas, an increasing pressure on deep-sea fisheries is probably an even more serious threat for the deep-sea communities, and a recent publication reports that deep-sea fishes qualify as endangered. Sustainable use of the deep sea and the organisms that inhabit it should thus be aimed for.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Literatur
Zurück zum Zitat Anderson OF, Clark MR (2003) Analysis of the bycatch in the fishery for orange roughy, Hoplostethus atlanticus, on the South Tasmanian Rise. Mar Freshw Res 54:643–652CrossRef Anderson OF, Clark MR (2003) Analysis of the bycatch in the fishery for orange roughy, Hoplostethus atlanticus, on the South Tasmanian Rise. Mar Freshw Res 54:643–652CrossRef
Zurück zum Zitat Atomi H (2005) Recent progress towards the application of hyperthermophiles and their enzymes. Curr Opin Chem Biol 9:166–173CrossRef Atomi H (2005) Recent progress towards the application of hyperthermophiles and their enzymes. Curr Opin Chem Biol 9:166–173CrossRef
Zurück zum Zitat Bowman JP, McCammon SA, Brown MV, Nichols DS, McMeekin TA (1997) Diversity and association of psychrophilic bacteria in Antarctic sea ice. Appl Environ Microbiol 63:3068–3078 Bowman JP, McCammon SA, Brown MV, Nichols DS, McMeekin TA (1997) Diversity and association of psychrophilic bacteria in Antarctic sea ice. Appl Environ Microbiol 63:3068–3078
Zurück zum Zitat van den Burg B (2003) Extremophiles as a source for novel enzymes. Curr Opin Microbiol 6:213–218CrossRef van den Burg B (2003) Extremophiles as a source for novel enzymes. Curr Opin Microbiol 6:213–218CrossRef
Zurück zum Zitat Butler PJ, Koslow JA, Snelgrove PVR, Juniper SK (2001) Review of the benthic biodiversity of the deep sea. CSIRO Marine Research, Australia Butler PJ, Koslow JA, Snelgrove PVR, Juniper SK (2001) Review of the benthic biodiversity of the deep sea. CSIRO Marine Research, Australia
Zurück zum Zitat Cailliet GM, Andrews AH, Burton EJ, Watters DL, Kline DE, Ferry-Graham LA (2001) Age determination and validation studies of marine fishes: do deep-dwellers live longer? Exp Gerontol 36:739–764CrossRef Cailliet GM, Andrews AH, Burton EJ, Watters DL, Kline DE, Ferry-Graham LA (2001) Age determination and validation studies of marine fishes: do deep-dwellers live longer? Exp Gerontol 36:739–764CrossRef
Zurück zum Zitat Cavicchioli R, Siddiqui KS, Andrews D, Sowers KR (2002) Low-temperature extremophiles and their applications. Curr Opin Biotechnol 13(3):253–261CrossRef Cavicchioli R, Siddiqui KS, Andrews D, Sowers KR (2002) Low-temperature extremophiles and their applications. Curr Opin Biotechnol 13(3):253–261CrossRef
Zurück zum Zitat Chien A, Edgar DB, Trela JM (1976) Deoxyribonucleic acid polymerase from the extreme thermophile Thermus aquaticus. J Bacteriol 127(3):1550–1557 Chien A, Edgar DB, Trela JM (1976) Deoxyribonucleic acid polymerase from the extreme thermophile Thermus aquaticus. J Bacteriol 127(3):1550–1557
Zurück zum Zitat Daniel RM, Cowan DA (2000) Biomolecular stability and life at high temperatures. Cell Mol Life Sci 57(2):250–264CrossRef Daniel RM, Cowan DA (2000) Biomolecular stability and life at high temperatures. Cell Mol Life Sci 57(2):250–264CrossRef
Zurück zum Zitat DeLong EF (1997) Marine microbial diversity: the tip of the iceberg. Trends Biotechnol 15:203–207CrossRef DeLong EF (1997) Marine microbial diversity: the tip of the iceberg. Trends Biotechnol 15:203–207CrossRef
Zurück zum Zitat Demirjian DC, Moris-Varas F, Cassidy CS (2001) Enzymes from extremophiles. Curr Opin Chem Biol 5:144–151CrossRef Demirjian DC, Moris-Varas F, Cassidy CS (2001) Enzymes from extremophiles. Curr Opin Chem Biol 5:144–151CrossRef
Zurück zum Zitat Devine JA, Baker KD, Haedrich RL (2006) Fisheries: deep sea fishes qualify as endangered. Nature 439(7072):29CrossRef Devine JA, Baker KD, Haedrich RL (2006) Fisheries: deep sea fishes qualify as endangered. Nature 439(7072):29CrossRef
Zurück zum Zitat Edwards KJ, Bach W, McCollom TM (2005) Geomicrobiology in oceanography: microbe–mineral interactions at and below the seafloor. Trends Microbiol 13(9):449–456CrossRef Edwards KJ, Bach W, McCollom TM (2005) Geomicrobiology in oceanography: microbe–mineral interactions at and below the seafloor. Trends Microbiol 13(9):449–456CrossRef
Zurück zum Zitat Egorova K, Antranikian G (2005) Industrial relevance of thermophilic Archaea. Curr Opin Microbiol 8:649–655CrossRef Egorova K, Antranikian G (2005) Industrial relevance of thermophilic Archaea. Curr Opin Microbiol 8:649–655CrossRef
Zurück zum Zitat Eichler J (2001) Biotechnological uses of archaeal extremozymes. Biotechnol Adv 19:261–278CrossRef Eichler J (2001) Biotechnological uses of archaeal extremozymes. Biotechnol Adv 19:261–278CrossRef
Zurück zum Zitat Ewart KV, Lin Q, Hew CL (1999) Structure, function and evolution of anifreeze proteins. Cell Mol Life Sci 55:271–283CrossRef Ewart KV, Lin Q, Hew CL (1999) Structure, function and evolution of anifreeze proteins. Cell Mol Life Sci 55:271–283CrossRef
Zurück zum Zitat Fields PA (2001) Protein function at thermal extremes: balancing stability and flexibility. Comp Biochem Physiol 129(2–3):417–431 Fields PA (2001) Protein function at thermal extremes: balancing stability and flexibility. Comp Biochem Physiol 129(2–3):417–431
Zurück zum Zitat Fujiwara S (2002) Extremophiles: developments of their special function and potential resources. J Biosci Bioeng 94(6):518–525 Fujiwara S (2002) Extremophiles: developments of their special function and potential resources. J Biosci Bioeng 94(6):518–525
Zurück zum Zitat Georlette D, Blaise V, Collins T, D’Amico S, Gratia E, Hoyoux A, Marx JC, Sonan G, Feller G, Gerday C (2004) Some like it cold: biocatalysis at low temperatures. FEMS Microbiol Rev 28(1):25–42CrossRef Georlette D, Blaise V, Collins T, D’Amico S, Gratia E, Hoyoux A, Marx JC, Sonan G, Feller G, Gerday C (2004) Some like it cold: biocatalysis at low temperatures. FEMS Microbiol Rev 28(1):25–42CrossRef
Zurück zum Zitat Gomes J, Steiner W (2004) The biocatalytic potential of extremophiles and extremozymes. Food Technol Biotechnol 42(4):223–235 Gomes J, Steiner W (2004) The biocatalytic potential of extremophiles and extremozymes. Food Technol Biotechnol 42(4):223–235
Zurück zum Zitat Guezennec J (2002) Deep-sea hydrothermal vents: a new source of innovative bacterial exopolysaccharides of biotechnological interest? J Ind Microbiol Biotechnol 29(4):204–208CrossRef Guezennec J (2002) Deep-sea hydrothermal vents: a new source of innovative bacterial exopolysaccharides of biotechnological interest? J Ind Microbiol Biotechnol 29(4):204–208CrossRef
Zurück zum Zitat Gullo VP, McAlpine J, Lam KS, Baker D, Petersen F (2006) Drug discovery from natural products. J Ind Microbiol Biotechnol 33(7):523–531CrossRef Gullo VP, McAlpine J, Lam KS, Baker D, Petersen F (2006) Drug discovery from natural products. J Ind Microbiol Biotechnol 33(7):523–531CrossRef
Zurück zum Zitat Haefner B (2003) Drugs from the deep: marine natural products as drug candidates. Drug Discov Today 8(12):536–544CrossRef Haefner B (2003) Drugs from the deep: marine natural products as drug candidates. Drug Discov Today 8(12):536–544CrossRef
Zurück zum Zitat Horikoshi K (1998) Barophiles: deep-sea microorganisms adapted to an extreme environment. Curr Opin Microbiol 1:291–295CrossRef Horikoshi K (1998) Barophiles: deep-sea microorganisms adapted to an extreme environment. Curr Opin Microbiol 1:291–295CrossRef
Zurück zum Zitat Hoyoux A, Blaise V, Collins T, D’amico S, Gratia E, Huston AL, Marx JC, Sonan G, Zeng Y, Feller G, Gerday C (2004) Extreme catalysts from low-temperature environments. J Biosci Bioeng 98(5):317–330 Hoyoux A, Blaise V, Collins T, D’amico S, Gratia E, Huston AL, Marx JC, Sonan G, Zeng Y, Feller G, Gerday C (2004) Extreme catalysts from low-temperature environments. J Biosci Bioeng 98(5):317–330
Zurück zum Zitat Kiriakoulakis K, Bett BJ, White M, Wolff GA (2004) Organic biogeochemistry of the Darwin Mounds, a deep-water coral ecosystem, of the NE Atlantic. Deep Sea Res Part I: Oceanogr Res Pap 51(12):1937–1954CrossRef Kiriakoulakis K, Bett BJ, White M, Wolff GA (2004) Organic biogeochemistry of the Darwin Mounds, a deep-water coral ecosystem, of the NE Atlantic. Deep Sea Res Part I: Oceanogr Res Pap 51(12):1937–1954CrossRef
Zurück zum Zitat Krüger M, Treude T, Wolters H, Nauhaus K, Boetius A (2005) Microbial methane turnover in different marine habitats palaeogeography. Palaeoclimatol Palaeoecol 227(1–3):6–17CrossRef Krüger M, Treude T, Wolters H, Nauhaus K, Boetius A (2005) Microbial methane turnover in different marine habitats palaeogeography. Palaeoclimatol Palaeoecol 227(1–3):6–17CrossRef
Zurück zum Zitat Li X, Qin L (2005) Metagenomics-based drug discovery and marine microbial diversity. Trends Biotechnol 23(11):539–543CrossRef Li X, Qin L (2005) Metagenomics-based drug discovery and marine microbial diversity. Trends Biotechnol 23(11):539–543CrossRef
Zurück zum Zitat Lopez-Garcia P, Forterre P (2000) DNA topology and the thermal stress response, a tale from mesophiles and hyperthermophiles. Bioessays 22(8):738–746CrossRef Lopez-Garcia P, Forterre P (2000) DNA topology and the thermal stress response, a tale from mesophiles and hyperthermophiles. Bioessays 22(8):738–746CrossRef
Zurück zum Zitat Mancuso Nichols CA, Guezennec J, Bowman JP (2005) Exopolysaccharides from extreme marine environments with special consideration of the southern ocean, sea ice, and deep-sea hydrothermal vents: a review. Mar Biotechnol 7:253–271CrossRef Mancuso Nichols CA, Guezennec J, Bowman JP (2005) Exopolysaccharides from extreme marine environments with special consideration of the southern ocean, sea ice, and deep-sea hydrothermal vents: a review. Mar Biotechnol 7:253–271CrossRef
Zurück zum Zitat Margesin R, Schinner F (1997) Efficiency of indigenous and inoculated cold-adapted soil microorganisms for biodegradation of diesel oil in alpine soils. Appl Environ Microbiol 63:2660–2664 Margesin R, Schinner F (1997) Efficiency of indigenous and inoculated cold-adapted soil microorganisms for biodegradation of diesel oil in alpine soils. Appl Environ Microbiol 63:2660–2664
Zurück zum Zitat Mattila P, Korpela J, Tenkanen T, Pitkanen K (1991) Fidelity of DNA synthesis by the Thermococcus litoralis DNA polymerase—an extremely heat stable enzyme with proofreading activity. Nucleic Acids Res 19(18):4967–4973CrossRef Mattila P, Korpela J, Tenkanen T, Pitkanen K (1991) Fidelity of DNA synthesis by the Thermococcus litoralis DNA polymerase—an extremely heat stable enzyme with proofreading activity. Nucleic Acids Res 19(18):4967–4973CrossRef
Zurück zum Zitat Maugeri TL, Gugliandolo C, Caccamo D, Stackebrandt E (2002) Three novel halotolerant and thermophilic geobacillus strains from shallow marine vents. Syst Appl Microbiol 25:450–455CrossRef Maugeri TL, Gugliandolo C, Caccamo D, Stackebrandt E (2002) Three novel halotolerant and thermophilic geobacillus strains from shallow marine vents. Syst Appl Microbiol 25:450–455CrossRef
Zurück zum Zitat Miyadoh S (1993) Research on antibiotic screening in Japan over the last decade a producing microorganisms approach. Actinomycetologica 9:100–106 Miyadoh S (1993) Research on antibiotic screening in Japan over the last decade a producing microorganisms approach. Actinomycetologica 9:100–106
Zurück zum Zitat Mombelli E, Shehi E, Fusi P, Tortora P (2002) Exploring hyperthermophilic proteins under pressure: theoretical aspects and experimental findings. Biochim Biophys Acta 1595(1–2):392–396 Mombelli E, Shehi E, Fusi P, Tortora P (2002) Exploring hyperthermophilic proteins under pressure: theoretical aspects and experimental findings. Biochim Biophys Acta 1595(1–2):392–396
Zurück zum Zitat Morita Y, Nakamura T, Hasan Q, Murakami Y, Yokoyama K, Tamiya E (1997) Cold-active enzymes from cold-adapted bacteria. J Am Oil Chem Soc 74:441–444 Morita Y, Nakamura T, Hasan Q, Murakami Y, Yokoyama K, Tamiya E (1997) Cold-active enzymes from cold-adapted bacteria. J Am Oil Chem Soc 74:441–444
Zurück zum Zitat Nakasone K, Ikegami A, Kato C, Usami R, Horikoshi K (1998) Mechanisms of gene expression controlled by pressure in deep-sea microorganisms. Extremophiles 2(3):149–154CrossRef Nakasone K, Ikegami A, Kato C, Usami R, Horikoshi K (1998) Mechanisms of gene expression controlled by pressure in deep-sea microorganisms. Extremophiles 2(3):149–154CrossRef
Zurück zum Zitat Prieur D (1992) Microbiology of deep-sea hydrothermal vents. TIBTECH 15:242–244 Prieur D (1992) Microbiology of deep-sea hydrothermal vents. TIBTECH 15:242–244
Zurück zum Zitat Reeve JN, Bailey KA, Li WT, Marc F, Sandman K, Soares DJ (2004) Archaeal histones: structures, stability and DNA binding. Biochem Soc Trans 32:227–230CrossRef Reeve JN, Bailey KA, Li WT, Marc F, Sandman K, Soares DJ (2004) Archaeal histones: structures, stability and DNA binding. Biochem Soc Trans 32:227–230CrossRef
Zurück zum Zitat Roberts JM, Long D, Wilson JB, Mortensen PB, Gage JD (2003) The cold-water coral Lophelia pertusa (Scleractinia) and enigmatic seabed mounds along the north-east Atlantic margin: are they related? Mar Pollut Bull 46(1):7–20CrossRef Roberts JM, Long D, Wilson JB, Mortensen PB, Gage JD (2003) The cold-water coral Lophelia pertusa (Scleractinia) and enigmatic seabed mounds along the north-east Atlantic margin: are they related? Mar Pollut Bull 46(1):7–20CrossRef
Zurück zum Zitat Salomon CE, Magarvey NA, Sherman DH (2004) Merging the potential of microbial genetics with biological and chemical diversity: an even brighter future for marine natural product drug discovery. Nat Prod Rep 21:105–121CrossRef Salomon CE, Magarvey NA, Sherman DH (2004) Merging the potential of microbial genetics with biological and chemical diversity: an even brighter future for marine natural product drug discovery. Nat Prod Rep 21:105–121CrossRef
Zurück zum Zitat Schiraldi C, De Rosa M (2002) The production of biocatalysts and biomolecules from extremophiles. Trends Biotechnol 20:515–521CrossRef Schiraldi C, De Rosa M (2002) The production of biocatalysts and biomolecules from extremophiles. Trends Biotechnol 20:515–521CrossRef
Zurück zum Zitat Sujatha P, Bapi Raju KVVSN, Ramana T (2005) Studies on a new marine streptomycete BT-408 producing polyketide antibiotic SBR-22 effective against methicillin resistant Staphylococcus aureus. Microbiol Res 160(2):119–126CrossRef Sujatha P, Bapi Raju KVVSN, Ramana T (2005) Studies on a new marine streptomycete BT-408 producing polyketide antibiotic SBR-22 effective against methicillin resistant Staphylococcus aureus. Microbiol Res 160(2):119–126CrossRef
Zurück zum Zitat Tarasov VG, Gebruk AV, Mironov AN, Moskalev LI (2005) Deep-sea and shallow-water hydrothermal vent communities: two different phenomena? Chem Geol 224(1–3):5–39CrossRef Tarasov VG, Gebruk AV, Mironov AN, Moskalev LI (2005) Deep-sea and shallow-water hydrothermal vent communities: two different phenomena? Chem Geol 224(1–3):5–39CrossRef
Zurück zum Zitat Tehei M, Zaccai G (2005) Adaptation to extreme environments: macromolecular dynamics in complex systems. Biochim Biophys Acta 1724(3):404–410 Tehei M, Zaccai G (2005) Adaptation to extreme environments: macromolecular dynamics in complex systems. Biochim Biophys Acta 1724(3):404–410
Zurück zum Zitat Tunnicliffe V, Thomson R (1999) The endeavour hot vents area: a pilot marine protected area in Canada’s pacific ocean. Report for Fisheries and Oceans Canada Tunnicliffe V, Thomson R (1999) The endeavour hot vents area: a pilot marine protected area in Canada’s pacific ocean. Report for Fisheries and Oceans Canada
Zurück zum Zitat Van Dover CL, Lutz RA (2004) Experimental ecology at deep-sea hydrothermal vents: a perspective. J Exp Mar Biol Ecol 300(1–2):273–307CrossRef Van Dover CL, Lutz RA (2004) Experimental ecology at deep-sea hydrothermal vents: a perspective. J Exp Mar Biol Ecol 300(1–2):273–307CrossRef
Zurück zum Zitat Watling I, Norse EA (1998) Disturbance of the seabed by mobile fishing gear: a comparison to forest clear cutting. Conserv Biol 12(6):1180–1197CrossRef Watling I, Norse EA (1998) Disturbance of the seabed by mobile fishing gear: a comparison to forest clear cutting. Conserv Biol 12(6):1180–1197CrossRef
Zurück zum Zitat Whitman WB, Coleman DC, Wiebe WJ (1998) Prokaryotes: the unseen majority. Proc Natl Acad Sci USA 95:6578–6583CrossRef Whitman WB, Coleman DC, Wiebe WJ (1998) Prokaryotes: the unseen majority. Proc Natl Acad Sci USA 95:6578–6583CrossRef
Zurück zum Zitat Williams ST, Goodfellow M, Alderson G, Wllington EM, Sneath PH, Sacki MJ (1983) Numerical classification of Streptomyces and related genera. J Gen Microbiol 129:1747–1813 Williams ST, Goodfellow M, Alderson G, Wllington EM, Sneath PH, Sacki MJ (1983) Numerical classification of Streptomyces and related genera. J Gen Microbiol 129:1747–1813
Zurück zum Zitat Yayanos AA (1995) Microbiology to 10,500 meters in the deep sea. Annu Rev Microbiol 49:777–805CrossRef Yayanos AA (1995) Microbiology to 10,500 meters in the deep sea. Annu Rev Microbiol 49:777–805CrossRef
Zurück zum Zitat Zierenberg RA, Adams MWW, Arp AJ (2000) Life in extreme environments: hydrothermal vents. Proc Natl Acad Sci USA 97(24):12961–12962CrossRef Zierenberg RA, Adams MWW, Arp AJ (2000) Life in extreme environments: hydrothermal vents. Proc Natl Acad Sci USA 97(24):12961–12962CrossRef
Metadaten
Titel
Bioprospecting of organisms from the deep sea: scientific and environmental aspects
verfasst von
Marianne Synnes
Publikationsdatum
01.02.2007
Verlag
Springer-Verlag
Erschienen in
Clean Technologies and Environmental Policy / Ausgabe 1/2007
Print ISSN: 1618-954X
Elektronische ISSN: 1618-9558
DOI
https://doi.org/10.1007/s10098-006-0062-7

Weitere Artikel der Ausgabe 1/2007

Clean Technologies and Environmental Policy 1/2007 Zur Ausgabe

Webwatch

Webwatch