Skip to main content

2020 | OriginalPaper | Buchkapitel

CorrSigNet: Learning CORRelated Prostate Cancer SIGnatures from Radiology and Pathology Images for Improved Computer Aided Diagnosis

verfasst von : Indrani Bhattacharya, Arun Seetharaman, Wei Shao, Rewa Sood, Christian A. Kunder, Richard E. Fan, Simon John Christoph Soerensen, Jeffrey B. Wang, Pejman Ghanouni, Nikola C. Teslovich, James D. Brooks, Geoffrey A. Sonn, Mirabela Rusu

Erschienen in: Medical Image Computing and Computer Assisted Intervention – MICCAI 2020

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Magnetic Resonance Imaging (MRI) is widely used for screening and staging prostate cancer. However, many prostate cancers have subtle features which are not easily identifiable on MRI, resulting in missed diagnoses and alarming variability in radiologist interpretation. Machine learning models have been developed in an effort to improve cancer identification, but current models localize cancer using MRI-derived features, while failing to consider the disease pathology characteristics observed on resected tissue. In this paper, we propose CorrSigNet, an automated two-step model that localizes prostate cancer on MRI by capturing the pathology features of cancer. First, the model learns MRI signatures of cancer that are correlated with corresponding histopathology features using Common Representation Learning. Second, the model uses the learned correlated MRI features to train a Convolutional Neural Network to localize prostate cancer. The histopathology images are used only in the first step to learn the correlated features. Once learned, these correlated features can be extracted from MRI of new patients (without histopathology or surgery) to localize cancer. We trained and validated our framework on a unique dataset of 75 patients with 806 slices who underwent MRI followed by prostatectomy surgery. We tested our method on an independent test set of 20 prostatectomy patients (139 slices, 24 cancerous lesions, 1.12M pixels) and achieved a per-pixel sensitivity of 0.81, specificity of 0.71, AUC of 0.86 and a per-lesion AUC of \(0.96 \pm 0.07\), outperforming the current state-of-the-art accuracy in predicting prostate cancer using MRI.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
1.
Zurück zum Zitat Barentsz, J.O., et al.: Synopsis of the PI-RADS v2 guidelines for multiparametric prostate magnetic resonance imaging and recommendations for use. Eur. Urol. 69(1), 41 (2016)CrossRef Barentsz, J.O., et al.: Synopsis of the PI-RADS v2 guidelines for multiparametric prostate magnetic resonance imaging and recommendations for use. Eur. Urol. 69(1), 41 (2016)CrossRef
2.
Zurück zum Zitat Ahmed, H.U., et al.: Diagnostic accuracy of multi-parametric MRI and TRUS biopsy in prostate cancer (PROMIS): a paired validating confirmatory study. Lancet 389(10071), 815–822 (2017)CrossRef Ahmed, H.U., et al.: Diagnostic accuracy of multi-parametric MRI and TRUS biopsy in prostate cancer (PROMIS): a paired validating confirmatory study. Lancet 389(10071), 815–822 (2017)CrossRef
3.
Zurück zum Zitat Viswanath, S.E., et al.: Central gland and peripheral zone prostate tumors have significantly different quantitative imaging signatures on 3 Tesla endorectal, in vivo T2-weighted MR imagery. J. Magn. Reson. Imaging 36(1), 213–224 (2012)CrossRef Viswanath, S.E., et al.: Central gland and peripheral zone prostate tumors have significantly different quantitative imaging signatures on 3 Tesla endorectal, in vivo T2-weighted MR imagery. J. Magn. Reson. Imaging 36(1), 213–224 (2012)CrossRef
4.
Zurück zum Zitat Sumathipala, Y., Lay, N., Turkbey, B., Smith, C., Choyke, P.L., Summers, R.M.: Prostate cancer detection from multi-institution multiparametric MRIs using deep convolutional neural networks. J. Med. Imaging 5(4), 044507 (2018)CrossRef Sumathipala, Y., Lay, N., Turkbey, B., Smith, C., Choyke, P.L., Summers, R.M.: Prostate cancer detection from multi-institution multiparametric MRIs using deep convolutional neural networks. J. Med. Imaging 5(4), 044507 (2018)CrossRef
5.
Zurück zum Zitat Litjens, G., Debats, O., Barentsz, J., Karssemeijer, N., Huisman, H.: Computer-aided detection of prostate cancer in MRI. IEEE Trans. Med. Imaging 33(5), 1083–1092 (2014)CrossRef Litjens, G., Debats, O., Barentsz, J., Karssemeijer, N., Huisman, H.: Computer-aided detection of prostate cancer in MRI. IEEE Trans. Med. Imaging 33(5), 1083–1092 (2014)CrossRef
6.
Zurück zum Zitat Armato, S.G., et al.: PROSTATEx challenges for computerized classification of prostate lesions from multiparametric magnetic resonance images. J. Med. Imaging 5(4), 044501 (2018)CrossRef Armato, S.G., et al.: PROSTATEx challenges for computerized classification of prostate lesions from multiparametric magnetic resonance images. J. Med. Imaging 5(4), 044501 (2018)CrossRef
7.
Zurück zum Zitat Viswanath, S.E., et al.: Comparing radiomic classifiers and classifier ensembles for detection of peripheral zone prostate tumors on T2-weighted MRI: a multi-site study. BMC Med. Imaging 19(1), 22 (2019)CrossRef Viswanath, S.E., et al.: Comparing radiomic classifiers and classifier ensembles for detection of peripheral zone prostate tumors on T2-weighted MRI: a multi-site study. BMC Med. Imaging 19(1), 22 (2019)CrossRef
8.
Zurück zum Zitat Cao, R., et al.: Joint prostate cancer detection and gleason score prediction in mp-MRI via FocalNet. IEEE Trans. Med. Imaging 38(11), 2496–2506 (2019)CrossRef Cao, R., et al.: Joint prostate cancer detection and gleason score prediction in mp-MRI via FocalNet. IEEE Trans. Med. Imaging 38(11), 2496–2506 (2019)CrossRef
9.
Zurück zum Zitat Priester, A., et al.: Magnetic resonance imaging underestimation of prostate cancer geometry: use of patient specific molds to correlate images with whole mount pathology. J. Urol. 197(2), 320–326 (2017)CrossRef Priester, A., et al.: Magnetic resonance imaging underestimation of prostate cancer geometry: use of patient specific molds to correlate images with whole mount pathology. J. Urol. 197(2), 320–326 (2017)CrossRef
10.
Zurück zum Zitat Xie, S., Tu, Z.: Holistically-nested edge detection. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 1395–1403 (2015) Xie, S., Tu, Z.: Holistically-nested edge detection. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 1395–1403 (2015)
11.
Zurück zum Zitat Rusu, M., et al.: Registration of pre-surgical MRI and histopathology images from radical prostatectomy via RAPSODI. Med. Phys. (2020, in press) Rusu, M., et al.: Registration of pre-surgical MRI and histopathology images from radical prostatectomy via RAPSODI. Med. Phys. (2020, in press)
12.
Zurück zum Zitat Nyúl, L.G., Udupa, J.K., Zhang, X.: New variants of a method of MRI scale standardization. IEEE Trans. Med. Imaging 19(2), 143–150 (2000)CrossRef Nyúl, L.G., Udupa, J.K., Zhang, X.: New variants of a method of MRI scale standardization. IEEE Trans. Med. Imaging 19(2), 143–150 (2000)CrossRef
13.
Zurück zum Zitat Simonyan, K., Zisserman, A.: Very deep convolutional networks for large-scale image recognition. arXiv preprint arXiv:1409.1556 (2014) Simonyan, K., Zisserman, A.: Very deep convolutional networks for large-scale image recognition. arXiv preprint arXiv:​1409.​1556 (2014)
14.
Zurück zum Zitat Chandar, S., Khapra, M.M., Larochelle, H., Ravindran, B.: Correlational neural networks. Neural Comput. 28(2), 257–285 (2016)MathSciNetCrossRef Chandar, S., Khapra, M.M., Larochelle, H., Ravindran, B.: Correlational neural networks. Neural Comput. 28(2), 257–285 (2016)MathSciNetCrossRef
15.
Zurück zum Zitat Harrison, A.P., Xu, Z., George, K., Lu, L., Summers, R.M., Mollura, D.J.: Progressive and multi-path holistically nested neural networks for pathological lung segmentation from CT images. In: Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D.L., Duchesne, S. (eds.) MICCAI 2017. LNCS, vol. 10435, pp. 621–629. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-66179-7_71CrossRef Harrison, A.P., Xu, Z., George, K., Lu, L., Summers, R.M., Mollura, D.J.: Progressive and multi-path holistically nested neural networks for pathological lung segmentation from CT images. In: Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D.L., Duchesne, S. (eds.) MICCAI 2017. LNCS, vol. 10435, pp. 621–629. Springer, Cham (2017). https://​doi.​org/​10.​1007/​978-3-319-66179-7_​71CrossRef
16.
Zurück zum Zitat Roth, H.R., Lu, L., Farag, A., Sohn, A., Summers, R.M.: Spatial aggregation of holistically-nested networks for automated pancreas segmentation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 451–459. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_52CrossRef Roth, H.R., Lu, L., Farag, A., Sohn, A., Summers, R.M.: Spatial aggregation of holistically-nested networks for automated pancreas segmentation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 451–459. Springer, Cham (2016). https://​doi.​org/​10.​1007/​978-3-319-46723-8_​52CrossRef
17.
Zurück zum Zitat Nogues, I., et al.: Automatic lymph node cluster segmentation using holistically-nested neural networks and structured optimization in CT images. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 388–397. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_45CrossRef Nogues, I., et al.: Automatic lymph node cluster segmentation using holistically-nested neural networks and structured optimization in CT images. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 388–397. Springer, Cham (2016). https://​doi.​org/​10.​1007/​978-3-319-46723-8_​45CrossRef
Metadaten
Titel
CorrSigNet: Learning CORRelated Prostate Cancer SIGnatures from Radiology and Pathology Images for Improved Computer Aided Diagnosis
verfasst von
Indrani Bhattacharya
Arun Seetharaman
Wei Shao
Rewa Sood
Christian A. Kunder
Richard E. Fan
Simon John Christoph Soerensen
Jeffrey B. Wang
Pejman Ghanouni
Nikola C. Teslovich
James D. Brooks
Geoffrey A. Sonn
Mirabela Rusu
Copyright-Jahr
2020
DOI
https://doi.org/10.1007/978-3-030-59713-9_31

Premium Partner