Fungal evolution and taxonomy

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Zurück zum Zitat Benjamin RK (1965) Study in specificity: minute fungi parasitize living arthropods. Nat Hist 74:42–49 Benjamin RK (1965) Study in specificity: minute fungi parasitize living arthropods. Nat Hist 74:42–49

Zurück zum Zitat Blackwell M (1994) Minute mycological mysteries: the influence of arthropods on the lives of fungi. Mycologia 86:1–17CrossRef Blackwell M (1994) Minute mycological mysteries: the influence of arthropods on the lives of fungi. Mycologia 86:1–17CrossRef

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Zurück zum Zitat Blackwell M, Malloch D (1989) Similarity of Amphoromorpha and secondary capilliconidia of Basidiobolus. Mycologia 81:735–741CrossRef Blackwell M, Malloch D (1989) Similarity of Amphoromorpha and secondary capilliconidia of Basidiobolus. Mycologia 81:735–741CrossRef

Zurück zum Zitat Blackwell M, Spatafora JW, Malloch D, Taylor JW (1993) Consideration of higher taxonomic relationships involving Pyxidiophora. In: Wingfield MJ, Seifert KA, Webber JF (eds) Ceratocystis and Ophiostoma: taxonomy, ecology and pathology. American Phytopathological Society, St. Paul, pp 105–108 Blackwell M, Spatafora JW, Malloch D, Taylor JW (1993) Consideration of higher taxonomic relationships involving Pyxidiophora. In: Wingfield MJ, Seifert KA, Webber JF (eds) Ceratocystis and Ophiostoma: taxonomy, ecology and pathology. American Phytopathological Society, St. Paul, pp 105–108

Zurück zum Zitat Blackwell M, Henk D, Jones KG (2003) Extreme morphological divergence: phylogenetic position of a termite ectoparasite. Mycologia 95:987–992CrossRef Blackwell M, Henk D, Jones KG (2003) Extreme morphological divergence: phylogenetic position of a termite ectoparasite. Mycologia 95:987–992CrossRef

Zurück zum Zitat Blackwell M, Hibbett DS, Taylor JW, Spatafora JW (2006) Research coordination networks: a phylogeny for kingdom fungi (Deep Hypha). Mycologia 98:829–837CrossRefPubMed Blackwell M, Hibbett DS, Taylor JW, Spatafora JW (2006) Research coordination networks: a phylogeny for kingdom fungi (Deep Hypha). Mycologia 98:829–837CrossRefPubMed

Zurück zum Zitat Cassar SC, Blackwell M (1996) Non-monophyly of ambrosia fungi in Ambrosiella. Mycologia 88:596–601CrossRef Cassar SC, Blackwell M (1996) Non-monophyly of ambrosia fungi in Ambrosiella. Mycologia 88:596–601CrossRef

Zurück zum Zitat Currie CR, Wong B, Stuart AE, Schultz TR, Rehner SA, Mueller UG, Sung G-H, Spatafora JW, Straus NA (2003) Ancient tripartite coevolution in the attine ant-microbe symbiosis. Science 299:386–388CrossRefPubMed Currie CR, Wong B, Stuart AE, Schultz TR, Rehner SA, Mueller UG, Sung G-H, Spatafora JW, Straus NA (2003) Ancient tripartite coevolution in the attine ant-microbe symbiosis. Science 299:386–388CrossRefPubMed

Zurück zum Zitat De Kesel A (1996) Host specificity and habitat preference of Laboulbenia slackensis. Mycologia 88:565–573CrossRef De Kesel A (1996) Host specificity and habitat preference of Laboulbenia slackensis. Mycologia 88:565–573CrossRef

Zurück zum Zitat Findlay WPK (1982) Fungi: folklore, fiction, and fact. Mad River Press, Eureka Findlay WPK (1982) Fungi: folklore, fiction, and fact. Mad River Press, Eureka

Zurück zum Zitat Henk DA, Vilgalys R (2007) Molecular phylogeny suggests a single origin of insect symbiosis in the Pucciniomycetes with support for some relationships within the genus Septobasidium. Am J Bot 94:1515–1526CrossRef Henk DA, Vilgalys R (2007) Molecular phylogeny suggests a single origin of insect symbiosis in the Pucciniomycetes with support for some relationships within the genus Septobasidium. Am J Bot 94:1515–1526CrossRef

Zurück zum Zitat Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Thorsten Lumbsch H, Lutzoni F, Brandon Matheny P, McLaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai YC, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde KD, Ironside JE, Kõljalg U, Kurtzman CP, Larsson K-H, Lichtwardt R, Longcore J, Miądlikowska J, Miller A, Moncalvo JM, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schüßler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao YJ, Zhang N (2007) A higher-level phylogenetic classification of the Fungi. Mycol Res 111:509–547CrossRefPubMed Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Thorsten Lumbsch H, Lutzoni F, Brandon Matheny P, McLaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai YC, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde KD, Ironside JE, Kõljalg U, Kurtzman CP, Larsson K-H, Lichtwardt R, Longcore J, Miądlikowska J, Miller A, Moncalvo JM, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schüßler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao YJ, Zhang N (2007) A higher-level phylogenetic classification of the Fungi. Mycol Res 111:509–547CrossRefPubMed

Zurück zum Zitat Humber RA (2008) Evolution of entomopathogenicity in fungi. J Invertebr Pathol 98:262–266CrossRefPubMed Humber RA (2008) Evolution of entomopathogenicity in fungi. J Invertebr Pathol 98:262–266CrossRefPubMed

Zurück zum Zitat Hunt T, Bergsten J, Levkanicova Z, Papadopoulou A, John O, Wild R, Hammond PM, Ahrens D, Balke M, Caterino MS, Gómez-Zurita J, Ribera I, Barraclough TG, Bocakova M, Bocak L, Vogler AP (2007) A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation. Science 318:1913–1916CrossRefPubMed Hunt T, Bergsten J, Levkanicova Z, Papadopoulou A, John O, Wild R, Hammond PM, Ahrens D, Balke M, Caterino MS, Gómez-Zurita J, Ribera I, Barraclough TG, Bocakova M, Bocak L, Vogler AP (2007) A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation. Science 318:1913–1916CrossRefPubMed

Zurück zum Zitat Kerwin JL, Petersen EE (1997) Fungi: Oomycetes and Chytridiomycetes. In: Lacey LA (ed) Manual of techniques in insect pathology. Academic Press, New York, pp 251–268CrossRef Kerwin JL, Petersen EE (1997) Fungi: Oomycetes and Chytridiomycetes. In: Lacey LA (ed) Manual of techniques in insect pathology. Academic Press, New York, pp 251–268CrossRef

Zurück zum Zitat Little AEF, Currie CR (2008) Black yeast symbionts compromise the efficiency of antibiotic defenses in fungus-growing ants. Ecology 89:1216–1222CrossRefPubMed Little AEF, Currie CR (2008) Black yeast symbionts compromise the efficiency of antibiotic defenses in fungus-growing ants. Ecology 89:1216–1222CrossRefPubMed

Zurück zum Zitat Matheny PB, Aime MC, Bougher NL, Buyck B, Desjardin DE, Horak E, Kropp BR, Jean Lodge D, Soytong K, Trappe JM, Hibbett DS (2009) Out of the palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae. J Biogeogr 36:577–592CrossRef Matheny PB, Aime MC, Bougher NL, Buyck B, Desjardin DE, Horak E, Kropp BR, Jean Lodge D, Soytong K, Trappe JM, Hibbett DS (2009) Out of the palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae. J Biogeogr 36:577–592CrossRef

Zurück zum Zitat Munkacsi AB, Pan JJ, Villesen P, Mueller UG, Blackwell M, McLaughlin DJ (2004) Convergent coevolution in the domestication of coral mushrooms by fungus-growing ants. Proc R Soc Lond B Biol Sci 271:1777–1782CrossRef Munkacsi AB, Pan JJ, Villesen P, Mueller UG, Blackwell M, McLaughlin DJ (2004) Convergent coevolution in the domestication of coral mushrooms by fungus-growing ants. Proc R Soc Lond B Biol Sci 271:1777–1782CrossRef

Zurück zum Zitat Nag Raj TR, Kendrick WB (1993) The anamorph as genetic determinant in the holomorph: the Chalara connection in the ascomycetes, with special reference to the ophiostomatoid fungi. In: Wingfield MJ, Seifert KA, Webber JF (eds) Ceratocystis and Ophiostoma: taxonomy, ecology and pathology. American Phytopathological Society, St. Paul, pp 61–70 Nag Raj TR, Kendrick WB (1993) The anamorph as genetic determinant in the holomorph: the Chalara connection in the ascomycetes, with special reference to the ophiostomatoid fungi. In: Wingfield MJ, Seifert KA, Webber JF (eds) Ceratocystis and Ophiostoma: taxonomy, ecology and pathology. American Phytopathological Society, St. Paul, pp 61–70

Zurück zum Zitat Nikoh N, Fukatsu T (2000) Interkingdom host jumping underground: phylogenetic analysis of entomopathogenic fungi of the genus Cordyceps. Mol Biol Evol 17:629–638PubMed Nikoh N, Fukatsu T (2000) Interkingdom host jumping underground: phylogenetic analysis of entomopathogenic fungi of the genus Cordyceps. Mol Biol Evol 17:629–638PubMed

Zurück zum Zitat Poinar GO Jr (1992) Life in amber. Stanford University Press, California Poinar GO Jr (1992) Life in amber. Stanford University Press, California

Zurück zum Zitat Poinar GO Jr, Jacobson RL, Eisenberger CL (2006) Early Cretaceous phlebotomine sand fly larvae (Diptera: Psychodidae). Proc Entomol Soc Washington 108:785–792 Poinar GO Jr, Jacobson RL, Eisenberger CL (2006) Early Cretaceous phlebotomine sand fly larvae (Diptera: Psychodidae). Proc Entomol Soc Washington 108:785–792

Zurück zum Zitat Redhead SA, Malloch DA (1977) The Endomycetaceae: new concepts, new taxa. Canad J Bot 55:1701–1711CrossRef Redhead SA, Malloch DA (1977) The Endomycetaceae: new concepts, new taxa. Canad J Bot 55:1701–1711CrossRef

Zurück zum Zitat Robbertse B, Reeves JB, Schoch CL, Spatafora JW (2006) A phylogenomic analysis of the Ascomycota. Fungal Genet Biol 43:715–725CrossRefPubMed Robbertse B, Reeves JB, Schoch CL, Spatafora JW (2006) A phylogenomic analysis of the Ascomycota. Fungal Genet Biol 43:715–725CrossRefPubMed

Zurück zum Zitat Rossi W, Kotrba M, Triebel D (2005) A new species of Stigmatomyces from Baltic amber, the first fossil record of Laboulbeniomycetes. Mycol Res 109:271–274CrossRefPubMed Rossi W, Kotrba M, Triebel D (2005) A new species of Stigmatomyces from Baltic amber, the first fossil record of Laboulbeniomycetes. Mycol Res 109:271–274CrossRefPubMed

Zurück zum Zitat Schadt CW, Martin AP, Lipson DA, Schmidt SK (2003) Seasonal dynamics of previously unknown fungal lineages in tundra soils. Science 301:1359–1361CrossRefPubMed Schadt CW, Martin AP, Lipson DA, Schmidt SK (2003) Seasonal dynamics of previously unknown fungal lineages in tundra soils. Science 301:1359–1361CrossRefPubMed

Zurück zum Zitat Spatafora JW, Sung GH, Sung JM, Hywel-Jones NL, White JF Jr (2007) Phylogenetic evidence for an animal pathogen origin of ergot and the grass endophytes. Mol Ecol 16:1701–1711CrossRefPubMed Spatafora JW, Sung GH, Sung JM, Hywel-Jones NL, White JF Jr (2007) Phylogenetic evidence for an animal pathogen origin of ergot and the grass endophytes. Mol Ecol 16:1701–1711CrossRefPubMed

Zurück zum Zitat Suh S-O, Noda H, Blackwell M (2001) Insect symbiosis: derivation of yeast-like endosymbionts within an entomopathogenic filamentous lineage. Mol Biol Evol 18:995–1000PubMed Suh S-O, Noda H, Blackwell M (2001) Insect symbiosis: derivation of yeast-like endosymbionts within an entomopathogenic filamentous lineage. Mol Biol Evol 18:995–1000PubMed

Zurück zum Zitat Suh S-O, McHugh JV, Blackwell M (2004) Expansion of the Candida tanzawaensis yeast clade: 16 novel Candida species from basidiocarp-feeding beetles. Int J Syst Evol Microbiol 54:2409–2429CrossRefPubMed Suh S-O, McHugh JV, Blackwell M (2004) Expansion of the Candida tanzawaensis yeast clade: 16 novel Candida species from basidiocarp-feeding beetles. Int J Syst Evol Microbiol 54:2409–2429CrossRefPubMed

Zurück zum Zitat Suh S-O, McHugh JV, Pollock D, Blackwell M (2005) The beetle gut: a hyperdiverse source of novel yeasts. Mycol Res 109:261–265CrossRefPubMed Suh S-O, McHugh JV, Pollock D, Blackwell M (2005) The beetle gut: a hyperdiverse source of novel yeasts. Mycol Res 109:261–265CrossRefPubMed

Zurück zum Zitat Sung G-H, Hywel-Jones NL, Sung J-M, Luangsa-ard JJ, Shrestha B, Spatafora JW (2007) Phylogenetic classification of Cordyceps and the clavicipitaceous fungi. Stud Mycol 57:5–59PubMedCrossRef Sung G-H, Hywel-Jones NL, Sung J-M, Luangsa-ard JJ, Shrestha B, Spatafora JW (2007) Phylogenetic classification of Cordyceps and the clavicipitaceous fungi. Stud Mycol 57:5–59PubMedCrossRef

Zurück zum Zitat Sung GH, Poinar GO Jr, Spatafora JW (2008) The oldest fossil evidence of animal parasitism by fungi supports a Cretaceous diversification of fungal-arthropod symbioses. Mol Phylogenet Evol 49:495–502CrossRefPubMed Sung GH, Poinar GO Jr, Spatafora JW (2008) The oldest fossil evidence of animal parasitism by fungi supports a Cretaceous diversification of fungal-arthropod symbioses. Mol Phylogenet Evol 49:495–502CrossRefPubMed

Zurück zum Zitat Taylor JW, Berbee ML (2006) Dating divergences in the fungal tree of life: review and new analyses. Mycologia 98:838–849CrossRefPubMed Taylor JW, Berbee ML (2006) Dating divergences in the fungal tree of life: review and new analyses. Mycologia 98:838–849CrossRefPubMed

Zurück zum Zitat Vandenkoornhuyse P, Baldauf SL, Leyval C, Straczek J, Young JPW (2002) Extensive fungal diversity in plant roots. Science 295:2051CrossRefPubMed Vandenkoornhuyse P, Baldauf SL, Leyval C, Straczek J, Young JPW (2002) Extensive fungal diversity in plant roots. Science 295:2051CrossRefPubMed

Zurück zum Zitat Vega FE, Dowd PF (2005) The role of yeasts as insect endosymbionts. In: Vega FE, Blackwell M (eds) Insect-fungal associations: ecology and evolution. Oxford University Press, New York, pp 211–243 Vega FE, Dowd PF (2005) The role of yeasts as insect endosymbionts. In: Vega FE, Blackwell M (eds) Insect-fungal associations: ecology and evolution. Oxford University Press, New York, pp 211–243

Zurück zum Zitat Vega FE, Goettel MS, Blackwell M, Chandler D, Jackson MA, Keller S, Koike M, Maniania NK, Monzón A, Ownley B, Pell JK, Rangel DEN, Roy HE (2009) Fungal entomopathogens: new insights on their ecology. Fungal Ecol 2:149–159CrossRef Vega FE, Goettel MS, Blackwell M, Chandler D, Jackson MA, Keller S, Koike M, Maniania NK, Monzón A, Ownley B, Pell JK, Rangel DEN, Roy HE (2009) Fungal entomopathogens: new insights on their ecology. Fungal Ecol 2:149–159CrossRef

Zurück zum Zitat Weir A, Blackwell M (2005) Phylogeny of arthropod ectoparasitic ascomycetes. In: Vega FE, Blackwell M (eds) Insect-fungal associations: ecology and evolution. Oxford, UK, pp 119–145 Weir A, Blackwell M (2005) Phylogeny of arthropod ectoparasitic ascomycetes. In: Vega FE, Blackwell M (eds) Insect-fungal associations: ecology and evolution. Oxford, UK, pp 119–145

Zurück zum Zitat Whisler HC, Zebold SL, Shemanchuk JA (1974) Alternate host for mosquito parasite Coelomomyces. Nature 251:715–716CrossRefPubMed Whisler HC, Zebold SL, Shemanchuk JA (1974) Alternate host for mosquito parasite Coelomomyces. Nature 251:715–716CrossRefPubMed

Zurück zum Zitat White JF Jr, Taylor TN (1989) A trichomycete-like fossil from the Triassic of Antarctica. Mycologia 81:643–646CrossRef White JF Jr, Taylor TN (1989) A trichomycete-like fossil from the Triassic of Antarctica. Mycologia 81:643–646CrossRef

Zurück zum Zitat White MM, James TY, O’Donnell K, Cafaro MJ, Tanabe Y, Sugiyama J (2006) Phylogeny of the Zygomycota based on nuclear ribosomal sequence data. Mycologia 98:872–884CrossRefPubMed White MM, James TY, O’Donnell K, Cafaro MJ, Tanabe Y, Sugiyama J (2006) Phylogeny of the Zygomycota based on nuclear ribosomal sequence data. Mycologia 98:872–884CrossRefPubMed