Skip to main content
Erschienen in: Cellulose 4/2009

01.08.2009

Evidence for a novel mechanism of microbial cellulose degradation

verfasst von: David B. Wilson

Erschienen in: Cellulose | Ausgabe 4/2009

Einloggen

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

There are two well studied mechanisms that are used by cellulolytic microorganisms to degrade the cellulose present in plant cell walls and a third less well studied oxidative mechanism used by brown rot fungi. The well studied mechanisms use cellulases to hydrolyze the β-1,4 linkages present in cellulose, however the way in which cellulases are presented to the environment are quite different for each mechanism. Most aerobic microorganisms secrete a set of cellulases outside the cell (free cellulase mechanism) while most anaerobic microorganisms produce large multi enzyme complexes on their outer surface (cellulosomal mechanism). Their genomic sequences suggest that the aerobic bacterium, Cytophaga hutchinsonii and the anaerobic bacterium, Fibrobacter succinogenes, do not use either of these mechanisms for degrading cellulose, as these organisms only code for normal endocellulases not for processive cellulases like exocellulases and processive endocellulases which are used in both of the well studied mechanisms.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Literatur
Zurück zum Zitat Carvalho AL, Goyal A, Prates JA, Bolam DN, Gilbert HJ, Pires VM, Ferreira LM, Planas A, Romao MJ, Fontes CM (2004) The family 11 carbohydrate-binding module of Clostridium thermocellum Lic26A-Cel5E accommodates beta-1, 4- and beta-1, 3-1, 4-mixed linked glucans at a single binding site. J Biol Chem 279:34785–34793. doi:10.1074/jbc.M405867200 CrossRef Carvalho AL, Goyal A, Prates JA, Bolam DN, Gilbert HJ, Pires VM, Ferreira LM, Planas A, Romao MJ, Fontes CM (2004) The family 11 carbohydrate-binding module of Clostridium thermocellum Lic26A-Cel5E accommodates beta-1, 4- and beta-1, 3-1, 4-mixed linked glucans at a single binding site. J Biol Chem 279:34785–34793. doi:10.​1074/​jbc.​M405867200 CrossRef
Zurück zum Zitat Chen X, Zeng Y, Jiao N (2008) Characterization of Cytophaga-Flavobacteria community structure in the Bering Sea by cluster-specific 16S rRNA gene amplification analysis. J Microbiol Biotechnol 18:194–198 Chen X, Zeng Y, Jiao N (2008) Characterization of Cytophaga-Flavobacteria community structure in the Bering Sea by cluster-specific 16S rRNA gene amplification analysis. J Microbiol Biotechnol 18:194–198
Zurück zum Zitat Ding SY, Lamed R, Bayer EA, Himmel ME (2003) The bacterial scaffoldin: structure, function and potential applications in the nanosciences. Genet Eng (N Y) 25:209–225 Ding SY, Lamed R, Bayer EA, Himmel ME (2003) The bacterial scaffoldin: structure, function and potential applications in the nanosciences. Genet Eng (N Y) 25:209–225
Zurück zum Zitat Fields MW, Mallik S, Russell JB (2000) Fibrobacter succinogenes S85 ferments ball-milled cellulose as fast as cellobiose until cellulose surface area is limiting. Appl Microbiol Biotechnol 54:570–574. doi:10.1007/s002530000426 CrossRef Fields MW, Mallik S, Russell JB (2000) Fibrobacter succinogenes S85 ferments ball-milled cellulose as fast as cellobiose until cellulose surface area is limiting. Appl Microbiol Biotechnol 54:570–574. doi:10.​1007/​s002530000426 CrossRef
Zurück zum Zitat Fierobe HP, Mingardon F, Mechaly A, Bélaïch A, Rincon MT, Pagès S, Lamed R, Tardif C, Bélaïch JP, Bayer EA (2005) Action of designer cellulosomes on homogeneous versus complex substrates: controlled incorporation of three distinct enzymes into a defined trifunctional scaffoldin. J Biol Chem 280:16325–16334. doi:10.1074/jbc.M414449200 CrossRef Fierobe HP, Mingardon F, Mechaly A, Bélaïch A, Rincon MT, Pagès S, Lamed R, Tardif C, Bélaïch JP, Bayer EA (2005) Action of designer cellulosomes on homogeneous versus complex substrates: controlled incorporation of three distinct enzymes into a defined trifunctional scaffoldin. J Biol Chem 280:16325–16334. doi:10.​1074/​jbc.​M414449200 CrossRef
Zurück zum Zitat Gilad R, Rabinovich L, Yaron S, Bayer EA, Lamed R, Gilbert HJ, Shoham Y (2003) CelI, a noncellulosomal family 9 enzyme from Clostridium thermocellum, is a processive endoglucanase that degrades crystalline cellulose. J Bacteriol 18:391–398. doi:10.1128/JB.185.2.391-398.2003 CrossRef Gilad R, Rabinovich L, Yaron S, Bayer EA, Lamed R, Gilbert HJ, Shoham Y (2003) CelI, a noncellulosomal family 9 enzyme from Clostridium thermocellum, is a processive endoglucanase that degrades crystalline cellulose. J Bacteriol 18:391–398. doi:10.​1128/​JB.​185.​2.​391-398.​2003 CrossRef
Zurück zum Zitat Hashimoto W, Yamasaki M, Itoh T, Momma K, Mikami B, Murata K (2004) Super-channel in bacteria: structural and functional aspects of a novel biosystem for the import and depolymerization of macromolecules. J Biosci Bioeng 98:399–413 Hashimoto W, Yamasaki M, Itoh T, Momma K, Mikami B, Murata K (2004) Super-channel in bacteria: structural and functional aspects of a novel biosystem for the import and depolymerization of macromolecules. J Biosci Bioeng 98:399–413
Zurück zum Zitat Hastie PM, Mitchell K, Murray JA (2008) Semi-quantitative analysis of Ruminococcus flavefaciens, Fibrobacter succinogenes and Streptococcus bovis in the equine large intestine using real-time polymerase chain reaction. Br J Nutr 1:1–8 Hastie PM, Mitchell K, Murray JA (2008) Semi-quantitative analysis of Ruminococcus flavefaciens, Fibrobacter succinogenes and Streptococcus bovis in the equine large intestine using real-time polymerase chain reaction. Br J Nutr 1:1–8
Zurück zum Zitat Irwin DC, Spezio M, Walker LP, Wilson DB (1993) Activity studies of eight purified cellulases: specificity, synergism, and binding domain effects. Biotechnol Bioeng 42:1002–1013. doi:10.1002/bit.260420811 CrossRef Irwin DC, Spezio M, Walker LP, Wilson DB (1993) Activity studies of eight purified cellulases: specificity, synergism, and binding domain effects. Biotechnol Bioeng 42:1002–1013. doi:10.​1002/​bit.​260420811 CrossRef
Zurück zum Zitat Jun HS, Qi M, Gong J, Egbosimba EE, Forsberg CW (2007) Outer membrane proteins of Fibrobacter succinogenes with potential roles in adhesion to cellulose and in cellulose digestion. J Bacteriol 189:6806–6815. doi:10.1128/JB.00560-07 CrossRef Jun HS, Qi M, Gong J, Egbosimba EE, Forsberg CW (2007) Outer membrane proteins of Fibrobacter succinogenes with potential roles in adhesion to cellulose and in cellulose digestion. J Bacteriol 189:6806–6815. doi:10.​1128/​JB.​00560-07 CrossRef
Zurück zum Zitat Kobayashi Y, Shinkai T, Koike S (2008) Ecological and physiological characterization shows that Fibrobacter succinogenes is important in rumen fiber digestion. Folia Microbiol (Praha) 53:195–200. doi:10.1007/s12223-008-0024-z CrossRef Kobayashi Y, Shinkai T, Koike S (2008) Ecological and physiological characterization shows that Fibrobacter succinogenes is important in rumen fiber digestion. Folia Microbiol (Praha) 53:195–200. doi:10.​1007/​s12223-008-0024-z CrossRef
Zurück zum Zitat Maglione G, Russell JB, Wilson DB (1997) Kinetics of Cellulose Digestion by Fibrobacter succinogenes S85. Appl Environ Microbiol 63:665–669 Maglione G, Russell JB, Wilson DB (1997) Kinetics of Cellulose Digestion by Fibrobacter succinogenes S85. Appl Environ Microbiol 63:665–669
Zurück zum Zitat Malburg SR, Malburg LM Jr, Liu T, Iyo AH, Forsberg CW (1997) Catalytic properties of the cellulose-binding endoglucanase F from Fibrobacter succinogenes S85. Appl Environ Microbiol 63:2449–2453 Malburg SR, Malburg LM Jr, Liu T, Iyo AH, Forsberg CW (1997) Catalytic properties of the cellulose-binding endoglucanase F from Fibrobacter succinogenes S85. Appl Environ Microbiol 63:2449–2453
Zurück zum Zitat Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, Bondurant SS, Larrondo LF, Canessa P, Vicuna R, Yadav J, Doddapaneni H, Subramanian V, Pisabarro AG, Lavín JL, Oguiza JA, Master E, Henrissat B, Coutinho PM, Harris P, Magnuson JK, Baker SE, Bruno K, Kenealy W, Hoegger PJ, Kües U, Ramaiya P, Lucas S, Salamov A, Shapiro H, Tu H, Chee CL, Misra M, Xie G, Teter S, Yaver D, James T, Mokrejs M, Pospisek M, Grigoriev IV, Brettin T, Rokhsar D, Berka R, Cullen D (2009) Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proc Natl Acad Sci USA 106:1954–1959 Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, Bondurant SS, Larrondo LF, Canessa P, Vicuna R, Yadav J, Doddapaneni H, Subramanian V, Pisabarro AG, Lavín JL, Oguiza JA, Master E, Henrissat B, Coutinho PM, Harris P, Magnuson JK, Baker SE, Bruno K, Kenealy W, Hoegger PJ, Kües U, Ramaiya P, Lucas S, Salamov A, Shapiro H, Tu H, Chee CL, Misra M, Xie G, Teter S, Yaver D, James T, Mokrejs M, Pospisek M, Grigoriev IV, Brettin T, Rokhsar D, Berka R, Cullen D (2009) Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proc Natl Acad Sci USA 106:1954–1959
Zurück zum Zitat McDonald JE, Lockhart RJ, Cox MJ, Allison HE, McCarthy AJ (2008) Detection of novel fibrobacter populations in landfill sites and determination of their relative abundance via quantitative PCR. Environ Microbiol 10:1310–1319. doi:10.1111/j.1462-2920.2007.01544.x CrossRef McDonald JE, Lockhart RJ, Cox MJ, Allison HE, McCarthy AJ (2008) Detection of novel fibrobacter populations in landfill sites and determination of their relative abundance via quantitative PCR. Environ Microbiol 10:1310–1319. doi:10.​1111/​j.​1462-2920.​2007.​01544.​x CrossRef
Zurück zum Zitat Nidetzky B, Steiner W, Hayn M, Claeyssens M (1994) Cellulose hydrolysis by the cellulases from Trichoderma reesei: a new model for synergistic interaction. Biochem J 298:705–710 Nidetzky B, Steiner W, Hayn M, Claeyssens M (1994) Cellulose hydrolysis by the cellulases from Trichoderma reesei: a new model for synergistic interaction. Biochem J 298:705–710
Zurück zum Zitat Qi M, Jun HS, Forsberg CW (2007) Characterization and synergistic interactions of Fibrobacter succinogenes glycoside hydrolases. Appl Environ Microbiol 73:6098–6105CrossRef Qi M, Jun HS, Forsberg CW (2007) Characterization and synergistic interactions of Fibrobacter succinogenes glycoside hydrolases. Appl Environ Microbiol 73:6098–6105CrossRef
Zurück zum Zitat Spiridonov NA, Wilson DB (1998) Regulation of biosynthesis of individual cellulases in Thermomonospora fusca. J Bacteriol 180:3529–3532 Spiridonov NA, Wilson DB (1998) Regulation of biosynthesis of individual cellulases in Thermomonospora fusca. J Bacteriol 180:3529–3532
Zurück zum Zitat Teeri TT, Koivula A, Linder M, Wohlfahrt G, Divne C, Jones TA (1998) Trichoderma reesei cellobiohydrolases: why so efficient on crystalline cellulose? Biochem Soc Trans 26:173–178 Teeri TT, Koivula A, Linder M, Wohlfahrt G, Divne C, Jones TA (1998) Trichoderma reesei cellobiohydrolases: why so efficient on crystalline cellulose? Biochem Soc Trans 26:173–178
Zurück zum Zitat Warnecke F, Luginbühl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, Cayouette M, McHardy AC, Djordjevic G, Aboushadi N, Sorek R, Tringe SG, Podar M, Martin HG, Kunin V, Dalevi D, Madejska J, Kirton E, Platt D, Szeto E, Salamov A, Barry K, Mikhailova N, Kyrpides NC, Matson EG, Ottesen EA, Zhang X, Hernández M, Murillo C, Acosta LG, Rigoutsos I, Tamayo G, Green BD, Chang C, Rubin EM, Mathur EJ, Robertson DE, Hugenholtz P, Leadbetter JR (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450:560–565. doi:10.1038/nature06269 CrossRef Warnecke F, Luginbühl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, Cayouette M, McHardy AC, Djordjevic G, Aboushadi N, Sorek R, Tringe SG, Podar M, Martin HG, Kunin V, Dalevi D, Madejska J, Kirton E, Platt D, Szeto E, Salamov A, Barry K, Mikhailova N, Kyrpides NC, Matson EG, Ottesen EA, Zhang X, Hernández M, Murillo C, Acosta LG, Rigoutsos I, Tamayo G, Green BD, Chang C, Rubin EM, Mathur EJ, Robertson DE, Hugenholtz P, Leadbetter JR (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450:560–565. doi:10.​1038/​nature06269 CrossRef
Zurück zum Zitat Wilson DB (2008a) Aerobic microbial cellulase systems. Chap. 11. In: Himmel ME (ed) Biomass recalcitrance: deconstructing the plant cell wall for bioenergy. Blackwell, Oxford Wilson DB (2008a) Aerobic microbial cellulase systems. Chap. 11. In: Himmel ME (ed) Biomass recalcitrance: deconstructing the plant cell wall for bioenergy. Blackwell, Oxford
Zurück zum Zitat Xie G, Bruce DC, Challacombe JF, Chertkov O, Detter JC, Gilna P, Han CS, Lucas S, Misra M, Myers GL, Richardson P, Tapia R, Thayer N, Thompson LS, Brettin TS, Henrissat B, Wilson DB, McBridge MJ (2007) Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii. Appl Environ Microbiol 73:3536–3546. doi:10.1128/AEM.00225-07 CrossRef Xie G, Bruce DC, Challacombe JF, Chertkov O, Detter JC, Gilna P, Han CS, Lucas S, Misra M, Myers GL, Richardson P, Tapia R, Thayer N, Thompson LS, Brettin TS, Henrissat B, Wilson DB, McBridge MJ (2007) Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii. Appl Environ Microbiol 73:3536–3546. doi:10.​1128/​AEM.​00225-07 CrossRef
Zurück zum Zitat Zverlov VV, Schwarz WH (2008) Bacterial cellulose hydrolysis in anaerobic environmental subsystems—Clostridium thermocellum and Clostridium stercorarium, thermophilic plant-fiber degraders. Ann N Y Acad Sci 1125:298–307. doi:10.1196/annals.1419.008 CrossRef Zverlov VV, Schwarz WH (2008) Bacterial cellulose hydrolysis in anaerobic environmental subsystems—Clostridium thermocellum and Clostridium stercorarium, thermophilic plant-fiber degraders. Ann N Y Acad Sci 1125:298–307. doi:10.​1196/​annals.​1419.​008 CrossRef
Metadaten
Titel
Evidence for a novel mechanism of microbial cellulose degradation
verfasst von
David B. Wilson
Publikationsdatum
01.08.2009
Verlag
Springer Netherlands
Erschienen in
Cellulose / Ausgabe 4/2009
Print ISSN: 0969-0239
Elektronische ISSN: 1572-882X
DOI
https://doi.org/10.1007/s10570-009-9326-9

Weitere Artikel der Ausgabe 4/2009

Cellulose 4/2009 Zur Ausgabe