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2017 | Supplement | Buchkapitel

Locally Adaptive Probabilistic Models for Global Segmentation of Pathological OCT Scans

verfasst von : Fabian Rathke, Mattia Desana, Christoph Schnörr

Erschienen in: Medical Image Computing and Computer Assisted Intervention − MICCAI 2017

Verlag: Springer International Publishing

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Abstract

Segmenting retinal tissue deformed by pathologies can be challenging. Segmentation approaches are often constructed with a certain pathology in mind and may require a large set of labeled pathological scans, and therefore are tailored to that particular pathology.
We present an approach that can be easily transfered to new pathologies, as it is designed with no particular pathology in mind and requires no pathological ground truth. The approach is based on a graphical model trained for healthy scans, which is modified locally by adding pathology-specific shape modifications. We use the framework of sum-product networks (SPN) to find the best combination of modified and unmodified local models that globally yield the best segmentation. The approach further allows to localize and quantify the pathology. We demonstrate the flexibility and the robustness of our approach, by presenting results for three different pathologies: diabetic macular edema (DME), age-related macular degeneration (AMD) and non-proliferative diabetic retinopathy.

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Literatur
1.
Zurück zum Zitat Chiu, S.J., Izatt, J.A., O’Connell, R.V., Winter, K.P., Toth, C.A., Farsiu, S.: Validated automatic segmentation of AMD pathology including drusen and geographic atrophy in SD-OCT images. Invest. Ophthalmol. Vis. Sci. 53(1), 53 (2012)CrossRef Chiu, S.J., Izatt, J.A., O’Connell, R.V., Winter, K.P., Toth, C.A., Farsiu, S.: Validated automatic segmentation of AMD pathology including drusen and geographic atrophy in SD-OCT images. Invest. Ophthalmol. Vis. Sci. 53(1), 53 (2012)CrossRef
2.
Zurück zum Zitat Chiu, S.J., Allingham, M.J., Mettu, P.S., Cousins, S.W., Izatt, J.A., Farsiu, S.: Kernel regression based segmentation of optical coherence tomography images with diabetic macular edema. Biomed. Opt. Express 6(4), 1172–1194 (2015)CrossRef Chiu, S.J., Allingham, M.J., Mettu, P.S., Cousins, S.W., Izatt, J.A., Farsiu, S.: Kernel regression based segmentation of optical coherence tomography images with diabetic macular edema. Biomed. Opt. Express 6(4), 1172–1194 (2015)CrossRef
3.
Zurück zum Zitat Karri, S., Chakraborthi, D., Chatterjee, J.: Learning layer-specific edges for segmenting retinal layers with large deformations. Biomed. Opt. Express 7(7), 2888–2901 (2016)CrossRef Karri, S., Chakraborthi, D., Chatterjee, J.: Learning layer-specific edges for segmenting retinal layers with large deformations. Biomed. Opt. Express 7(7), 2888–2901 (2016)CrossRef
4.
Zurück zum Zitat Rathke, F., Schmidt, S., Schnörr, C.: Probabilistic intra-retinal layer segmentation in 3-D OCT images using global shape regularization. Med. Image Anal. 18(5), 781–794 (2014)CrossRef Rathke, F., Schmidt, S., Schnörr, C.: Probabilistic intra-retinal layer segmentation in 3-D OCT images using global shape regularization. Med. Image Anal. 18(5), 781–794 (2014)CrossRef
5.
Zurück zum Zitat Poon, H., Domingos, P.: Sum-product networks: A new deep architecture. In: UAI, pp. 337–346 (2011) Poon, H., Domingos, P.: Sum-product networks: A new deep architecture. In: UAI, pp. 337–346 (2011)
6.
Zurück zum Zitat Tian, J., Varga, B., Tatrai, E., Fanni, P., Somfai, G.M., Smiddy, W.E., Debuc, D.C.: Performance evaluation of automated segmentation software on optical coherence tomography volume data. J. Biophotonics 9(5), 478–489 (2016)CrossRef Tian, J., Varga, B., Tatrai, E., Fanni, P., Somfai, G.M., Smiddy, W.E., Debuc, D.C.: Performance evaluation of automated segmentation software on optical coherence tomography volume data. J. Biophotonics 9(5), 478–489 (2016)CrossRef
Metadaten
Titel
Locally Adaptive Probabilistic Models for Global Segmentation of Pathological OCT Scans
verfasst von
Fabian Rathke
Mattia Desana
Christoph Schnörr
Copyright-Jahr
2017
DOI
https://doi.org/10.1007/978-3-319-66182-7_21

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