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Wood Science and Technology

Erschienen in:

01.09.2012 | Original

DNA extraction from dry wood of Neobalanocarpus heimii (Dipterocarpaceae) for forensic DNA profiling and timber tracking

verfasst von: Lee Hong Tnah, Soon Leong Lee, Kevin Kit Siong Ng, Subha Bhassu, Rofina Yasmin Othman

Erschienen in: Wood Science and Technology | Ausgabe 5/2012

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Abstract

Wood can be a good source of DNA for various applications in forensic forestry and timber trade if high-quality DNA can be retrieved from the dry wood. In order to provide a general guideline for DNA authenticity testing established for Neobalanocarpus heimii, this study was designed to evaluate the potential of extracting DNA from the dry wood. Overall, the efficacy of DNA extraction was higher for the cambium and sapwood than for the heartwood tissues. In terms of DNA extraction protocols, the Qiagen kit and CTAB with PTB protocol showed higher PCR amplification rates. In order to safeguard the intactness of the DNA, the DNA extraction from dry wood is recommended to be carried out within 6 weeks after felling for logs and 6 months after felling for stumps. The results also showed that the amplicon size might not account for the PCR amplification success rate, and chloroplast genome yielded higher amplification success rate compared with nuclear genome. However, only the chloroplast region can be perfectly retrieved from heat-treated lumber.

Vorheriger Artikel Mechanical behaviour of finger joints at elevated temperatures

Nächster Artikel Variation of measured cross-sectional cell dimensions and calculated water vapor permeability across a single growth ring of spruce wood

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Asia Forest Partnership (2005) Developing minimum standards of legality, timber tracking and chain of custody systems, verification systems among Asia Forest Partnership (AFP) partners. Work plan on legality, prepared by the Global Forestry Services (GFS) under the coordination of the Center for International Forestry Research (CIFOR)

Asif MJ, Cannon CH (2005) DNA extraction from processed wood: a case study for the identification of an endangered timber species (Gonystylus bancanus). Plant Mol Biol Rep 23:1–8

Bär W, Kratzer A, Mächler M, Schmid W (1988) Postmortem instability of DNA. Forensic Sci Int 39:59–70PubMedCrossRef

Cano RJ (1996) Analysing ancient DNA. Endeavour 20:162–167PubMedCrossRef

Chua LSL (1998) Neobalanocarpus heimii. 2008 IUCN red list of threatened species. http://www.iucnredlist.org. Accessed 14 May 2009

Cotton EA, Allsop RF, Guest JL, Frazier RR, Koumi P, Callow IP, Seager A, Sparkes RL (2000) Validation of the AMPFlSTR SGM Plus system for use in forensic casework. Forensic Sci Int 112:151–161PubMedCrossRef

Crowley TM, Muralitharan MS, Stevenson TW (2003) Isolating conifer DNA: a superior polysaccharide elimination method. Plant Mol Biol Rep 21:97a–97d

De Filippis L, Magel E (1998) Differences in genomic DNA extracted from bark and from wood of different zones in Robinia trees using RAPD-PCR. Trees 12:377–384

Deguilloux MF, Pemonge MH, Petit RJ (2002) Novel perspectives in wood certification and forensics: dry wood as a source of DNA. Proc R Soc Lond B Biol 269:1039–1046CrossRef

Deguilloux MF, Pemonge MH, Bertel L, Kremer A, Petit RJ (2003) Checking the geographical origin of oak wood: molecular and statistical tools. Mol Ecol 12:1629–1636PubMedCrossRef

Dumolin-Lapègue S, Petit RJ, Gielly L, Taberlet P (1999) Amplification of DNA from ancient and modern oak wood. Mol Ecol 8:2137–2140PubMedCrossRef

Fengel D (1970) Ultrastructural changes during aging of wood cells. Wood Sci Technol 4:176–188CrossRef

Forest Products Laboratory (1999) Wood handbook: wood as an engineering material. USDA general technical report FPL-GTR-113. U.S. Department of Agriculture Forest Service, Madison

Haque MN (2002) Modelling of solar kilns and the development of an optimized schedule for drying hardwood timber. PhD thesis, University of Sidney, Australia

Ito T, Akao Y, Yi H, Ohguchi K, Matsumoto K, Tanaka T, Iinuma M, Nozawa Y (2003) Antitumor effect of resveratrol oligomers against human cancer cell lines and the molecular mechanisms of apoptosis induced by vaticanol C. Carsinogenesis 24:1489–1497CrossRef

Kelman LM, Kelman Z (1999) The use of ancient DNA in paleontological studies. J Vertebr Paleontol 19:8–20CrossRef

Krenke BE, Tereba A, Anderson SJ, Buel E, Culhane S, Finis CJ, Tomsey CS, Zachetti JM, Masibay A, Rabbach DR, Amiott EA, Sprecher CJ (2002) Validation of a 16-locus fluorescent multiplex system. J Forensic Sci 47:773–785PubMed

Krings M, Stone A, Schmitz RW, Krainitzki H, Stoneking M, Pääbo S (1997) Neandertal DNA sequences and the origin of modern humans. Cell 90:19–30PubMedCrossRef

Lee AB, Cooper TA (1995) Improved direct PCR screen for bacterial colonies: wooden toothpicks inhibit PCR amplification. Biotechniques 18:225–226PubMed

Malaysia Timber Council (2006) The theory and practice of drying. http://www.mtc.com.my/. Accessed 15 Jun 2009

Murmanis L, Highley TL, Madison WI, Palmer JG (1987) Cytochemical localization of cellulases in decayed and non-decayed wood. Wood Sci Technol 21:101–109CrossRef

Murray M, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321–4325PubMedCrossRef

Pääbo S (1990) Amplifying ancient DNA. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR-protocols and applications—a laboratory manual. Academic Press, San Diego, pp 159–166

Poinar HN, Hofreiter M, Spaulding WG, Martin PS, Stankiewicz BA, Bland H, Evershed RP, Possnert G, Pääbo S (1998) Molecular coproscopy: dung and diet of the extinct ground sloth Nothrotheriops shastensis. Science 281:402–406PubMedCrossRef

Poinar HN, Kuch M, McDonald G, Martin P, Pääbo S (2003) Nuclear gene sequences from a late Pleistocene sloth coprolite. Curr Biol 12:1150–1152CrossRef

Rachmayanti Y, Leinemann L, Gailing O, Finkeldey R (2006) Extraction, amplification and characterization of wood DNA from Dipterocarpaceae. Plant Mol Biol Rep 24:45–55CrossRef

Rachmayanti Y, Leinemann L, Gailing O, Finkeldey R (2009) DNA from processes and unprocessed wood: factors influencing the isolation success. Forensic Sci Int Genet 3:185–192PubMedCrossRef

Shepherd M, Cross M, Stokoe RL, Scott LJ, Jones ME (2002) High-throughput DNA extraction from forest trees. Plant Mol Biol Rep 20:425a–425j

Symington CF (1943) Foresters’ manual of dipterocarps: Malayan Forest Records 16. Forest Research Institute Malaysia, Kuala Lumpur

Tanaka T, Ito T, Ido Y, Nakaya K, Iinuma M, Chelladurai V (2001) Hopeafuran and a C-glucosyl resveratrol isolated from stem wood of Hopea utilis. Chem Pharm Bull 49:785–787PubMedCrossRef

Thomas AR (1953) Malayan timbers—chengal and balau. Malayan Forester 16:103–108

Tibbits JFG, McManus LJ, Spokevicius AV, Bossinger G (2006) A rapid method for tissue collection and high-throughput isolation of genomic DNA from mature trees. Plant Mol Biol Rep 24:81–91CrossRef

Tnah LH, Lee SL, Ng KKS, Tani N, Bhassu S, Othman RY (2009) Geographical traceability of an important tropical timber (Neobalanocarpus heimii) inferred from chloroplast DNA. Forest Ecol Manag 258:1918–1923CrossRef

Tnah LH, Lee SL, Ng KKS, Faridah QZ, Faridah-Hanum I (2010a) Forensic DNA profiling of tropical timber species in Peninsular Malaysia. Forest Ecol Manag 259:1436–1446CrossRef

Tnah LH, Lee SL, Ng KKS, Faridah QZ, Faridah-Hanum I (2010b) Highly variable STR markers of Neobalanocarpus heimii (Dipterocarpaceae) for forensic DNA profiling. J Trop For Sci 22:214–226

Wallin JM, Buoncristiani MR, Lazaruk KD, Fildes N, Holt CL, Walsh PS (1998) TWGDAM validation of the AmpFlSTR^™ Blue PCR amplification kit for forensic casework analysis. J Forensic Sci 43:854–870PubMed

Yoshida K, Kagawa A, Nishiguchi M (2007) Extraction and detection of DNA from wood for species identification. In: Proceeding of the international symposium on development of improved methods to identify Shorea species wood and its origin. Forestry and Forest Products Research Institute, Ibaraki, Japan, pp 27–34

Titel: DNA extraction from dry wood of Neobalanocarpus heimii (Dipterocarpaceae) for forensic DNA profiling and timber tracking
verfasst von: Lee Hong Tnah
Soon Leong Lee
Kevin Kit Siong Ng
Subha Bhassu
Rofina Yasmin Othman
Publikationsdatum: 01.09.2012
Verlag: Springer-Verlag
Erschienen in: Wood Science and Technology / Ausgabe 5/2012
Print ISSN: 0043-7719
Elektronische ISSN: 1432-5225
DOI: https://doi.org/10.1007/s00226-011-0447-6

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