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Erschienen in: Microsystem Technologies 10/2021

03.01.2021 | Technical Paper

Performance investigations of filtering methods for T1 and T2 weighted infant brain MR images

verfasst von: Tushar H. Jaware, Vinod R. Patil, Ravindra D. Badgujar, Sumanta Bhattacharyya, Rajesh Dey, Rudra Sankar Dhar

Erschienen in: Microsystem Technologies | Ausgabe 10/2021

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Abstract

In recent decades, medical image analysis and diagnostic techniques have undergone significant advancements and have become a relatively important component of clinical practice. The most popular diagnostic resources are diagnostic images acquired from different modalities such as computed tomography and magnetic resonance imaging. Neonatal neuroimaging is an increasingly developing diagnostic imaging discipline with a particular focus on neonatal brain imaging. The neonatal brain growth and numerous neurological defects can be detected by the newborn brain MRI. MRI images consist primarily of objects of low contrast that are hampered in the image capturing by random noise. Noise produces ambiguous representations which influence disease identification and diagnosis, even mortality, leading to severe loses. Medical image de-noising mainly attempts to reconstruct the original image from its noisy observation as accurately as possible while maintaining the necessary graphical features such as textures and edges. It is also necessary that the medical images that assist healthcare practitioners towards precise disease analysis must be de-noised. This paper provides systematic analysis of de-noising methods for neonatal brain MR images in which each technique has its own conclusions, drawbacks and benefits. This work investigates performance as well as thorough study of different image de-noising approaches for T1 and T2-weighted neonatal Brain MR Images. Utilizing different statistical parameters such as PSNR, SSIM, MSE etc. the image de-noising approaches are compared.

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Literatur
Zurück zum Zitat Abd-Elmoniem KZ, Youssef ABM, Kadah YM (2002) Real-time speckle reduction and coherence enhancement in ultrasound imaging via nonlinear anisotropic diffusion. IEEE Trans Biomed Eng 49(9):997–1014CrossRef Abd-Elmoniem KZ, Youssef ABM, Kadah YM (2002) Real-time speckle reduction and coherence enhancement in ultrasound imaging via nonlinear anisotropic diffusion. IEEE Trans Biomed Eng 49(9):997–1014CrossRef
Zurück zum Zitat Angenent S, Pichon E, Tannenbaum A (2006) Mathematical methods in medical image processing. Bull Am Math Soc 43(3):365–396MathSciNetCrossRef Angenent S, Pichon E, Tannenbaum A (2006) Mathematical methods in medical image processing. Bull Am Math Soc 43(3):365–396MathSciNetCrossRef
Zurück zum Zitat Babu JJJ, Sudha GF (2016) Adaptive speckle reduction in ultrasound images using fuzzy logic on coefficient of variation. Biomed Signal Process Control 23:93–103CrossRef Babu JJJ, Sudha GF (2016) Adaptive speckle reduction in ultrasound images using fuzzy logic on coefficient of variation. Biomed Signal Process Control 23:93–103CrossRef
Zurück zum Zitat Buades A, Coll B, Morel JM (2005) A non-local algorithm for image denoising. In: Proceedings of IEEE international Conference Computer Society Conference on Computer Vision and Pattern Recognition (CVPR’05), vol 2. San Diego, pp 60–65 Buades A, Coll B, Morel JM (2005) A non-local algorithm for image denoising. In: Proceedings of IEEE international Conference Computer Society Conference on Computer Vision and Pattern Recognition (CVPR’05), vol 2. San Diego, pp 60–65
Zurück zum Zitat Chen Y, Liu J, Hu Y, Yang J, Shi L, Shu H, Gui Z, Coatrieux G, Luo L (2017) Discriminative feature representation: an effective postprocessing solution to low dose CT imaging. Phys Med 62(6):2103 Chen Y, Liu J, Hu Y, Yang J, Shi L, Shu H, Gui Z, Coatrieux G, Luo L (2017) Discriminative feature representation: an effective postprocessing solution to low dose CT imaging. Phys Med 62(6):2103
Zurück zum Zitat Coupe P, Hellier P, Kervrann C, Barillot C (2009) Nonlocal means-based speckle filtering for ultrasound images. IEEE Trans Image Process 18(10):2221–2229MathSciNetCrossRef Coupe P, Hellier P, Kervrann C, Barillot C (2009) Nonlocal means-based speckle filtering for ultrasound images. IEEE Trans Image Process 18(10):2221–2229MathSciNetCrossRef
Zurück zum Zitat Diwakar M and Kumar M (2016) Edge preservation based CT image denoising using wiener filtering and thresholding in wavelet domain. In: Proceedings of IEEE 4th international conference parallel, distributed and grid computing (PDGC 2016). IEEE, Waknaghat, pp 332–336 Diwakar M and Kumar M (2016) Edge preservation based CT image denoising using wiener filtering and thresholding in wavelet domain. In: Proceedings of IEEE 4th international conference parallel, distributed and grid computing (PDGC 2016). IEEE, Waknaghat, pp 332–336
Zurück zum Zitat Dolui S, Kuurstra A, Patarroyo Salgado I, Michailovich O (2013) A new similarity measure for non-local means filtering of MRI images. J Vis Commun Image Represent 24(7):1040–1054CrossRef Dolui S, Kuurstra A, Patarroyo Salgado I, Michailovich O (2013) A new similarity measure for non-local means filtering of MRI images. J Vis Commun Image Represent 24(7):1040–1054CrossRef
Zurück zum Zitat Foi A (2011) Noise estimation and removal in MR imaging: the variance-stabilization approach. In: Proceedings of IEEE international symposium on biomedical imaging: from Nano to Macro, Chicago, pp 1809–1814 Foi A (2011) Noise estimation and removal in MR imaging: the variance-stabilization approach. In: Proceedings of IEEE international symposium on biomedical imaging: from Nano to Macro, Chicago, pp 1809–1814
Zurück zum Zitat Garg A and Khandelwal V (2019) Despeckling of medical ultrasound images using fast bilateral filter and neighshrinksure filter in wavelet domain. In: Advances in signal processing and communication. Springer, pp 271–280 Garg A and Khandelwal V (2019) Despeckling of medical ultrasound images using fast bilateral filter and neighshrinksure filter in wavelet domain. In: Advances in signal processing and communication. Springer, pp 271–280
Zurück zum Zitat Gravel P, Beaudoin G, De Guise JA (2004) A method for modeling noise in medical images. IEEE Trans Med Imaging 23(10):1221–1232CrossRef Gravel P, Beaudoin G, De Guise JA (2004) A method for modeling noise in medical images. IEEE Trans Med Imaging 23(10):1221–1232CrossRef
Zurück zum Zitat Guo Y, Wang Y, Hou T (2011) Speckle filtering of ultrasonic images using a modified non local-based algorithm. Biomed Signal Process Control 6(2):129–138CrossRef Guo Y, Wang Y, Hou T (2011) Speckle filtering of ultrasonic images using a modified non local-based algorithm. Biomed Signal Process Control 6(2):129–138CrossRef
Zurück zum Zitat Hofheinz F, Langner J, Beuthien-Baumann B, Oehme L, Steinbach J, Kotzerke J, van den Hoff J (2011) Suitability of bilateral filtering for edge-preserving noise reduction in pet. EJNMMI Res 1(1):23CrossRef Hofheinz F, Langner J, Beuthien-Baumann B, Oehme L, Steinbach J, Kotzerke J, van den Hoff J (2011) Suitability of bilateral filtering for edge-preserving noise reduction in pet. EJNMMI Res 1(1):23CrossRef
Zurück zum Zitat Jomaa H, Mabrouk R, Khlifa N, Morain-Nicolier F (2018) Denoising of dynamic pet images using a multi-scale transform and non-local means filter. Biomed Signal Process Control 41:69–80CrossRef Jomaa H, Mabrouk R, Khlifa N, Morain-Nicolier F (2018) Denoising of dynamic pet images using a multi-scale transform and non-local means filter. Biomed Signal Process Control 41:69–80CrossRef
Zurück zum Zitat Kuan DT, Sawchuk AA, Strand TC, Chavel P (1985) Adaptive noise smoothing filter for images with signal-dependent noise. IEEE Trans Pattern Anal Mach Intell 2:165–177CrossRef Kuan DT, Sawchuk AA, Strand TC, Chavel P (1985) Adaptive noise smoothing filter for images with signal-dependent noise. IEEE Trans Pattern Anal Mach Intell 2:165–177CrossRef
Zurück zum Zitat Lee JS (1980) Digital image enhancement and noise filtering by use of local statistics. IEEE Trans Pattern Anal Mach Intell 2:165–168CrossRef Lee JS (1980) Digital image enhancement and noise filtering by use of local statistics. IEEE Trans Pattern Anal Mach Intell 2:165–168CrossRef
Zurück zum Zitat Lee JA, Geets X, Gregoire V, Bol A (2008) Edge-preserving filtering of images with low photon counts. IEEE Trans Pattern Anal Mach Intell 30(6):1014–1027CrossRef Lee JA, Geets X, Gregoire V, Bol A (2008) Edge-preserving filtering of images with low photon counts. IEEE Trans Pattern Anal Mach Intell 30(6):1014–1027CrossRef
Zurück zum Zitat Li GT, Wang CL, Huang PP, Yu WD (2013) SAR image despeckling using a space-domain filter with alterable window. IEEE Geosci Remote SensLett 10:263–267CrossRef Li GT, Wang CL, Huang PP, Yu WD (2013) SAR image despeckling using a space-domain filter with alterable window. IEEE Geosci Remote SensLett 10:263–267CrossRef
Zurück zum Zitat Li W et al (2019) Benchmark on automatic 6-month-old infant brain segmentation algorithms: the iSeg-2017 challenge. IEEE Trans Med Imaging 38(9):2219–2230CrossRef Li W et al (2019) Benchmark on automatic 6-month-old infant brain segmentation algorithms: the iSeg-2017 challenge. IEEE Trans Med Imaging 38(9):2219–2230CrossRef
Zurück zum Zitat Loupas T, McDicken W, Allan P (1989) An adaptive weighted median filter for speckle suppression in medical ultrasonic images. IEEE Trans Circuits Syst 36(1):129–135CrossRef Loupas T, McDicken W, Allan P (1989) An adaptive weighted median filter for speckle suppression in medical ultrasonic images. IEEE Trans Circuits Syst 36(1):129–135CrossRef
Zurück zum Zitat Makinen Y, Azzari L and Foi A (2019) Exact transform-domain noise variance for collaborative filtering of stationary correlated noise. In IEEE international conference on image processing (ICIP). pp 185–189 Makinen Y, Azzari L and Foi A (2019) Exact transform-domain noise variance for collaborative filtering of stationary correlated noise. In IEEE international conference on image processing (ICIP). pp 185–189
Zurück zum Zitat Manjon JV, Coupe P (2010) Adaptive non-local means denoising of MR images with spatially varying noise levels. J MagnReson Imaging 31(1):192–203CrossRef Manjon JV, Coupe P (2010) Adaptive non-local means denoising of MR images with spatially varying noise levels. J MagnReson Imaging 31(1):192–203CrossRef
Zurück zum Zitat Manjon JV, Coupe P, Buades A (2015) MRI noise estimation and denoising using non-local PCA. Med Image Anal 22(1):35–47CrossRef Manjon JV, Coupe P, Buades A (2015) MRI noise estimation and denoising using non-local PCA. Med Image Anal 22(1):35–47CrossRef
Zurück zum Zitat Mao B, Xiao D, Xiong X, Chen X, Zhang W, Kang Y (2013) Denoising low dose CT images via 3d total variation using CUDA. In: Proceedings of IEEE international conference medical imaging physics and engineering (ICMIPE 2013). IEEE, Shenyang, pp 47–50 Mao B, Xiao D, Xiong X, Chen X, Zhang W, Kang Y (2013) Denoising low dose CT images via 3d total variation using CUDA. In: Proceedings of IEEE international conference medical imaging physics and engineering (ICMIPE 2013). IEEE, Shenyang, pp 47–50
Zurück zum Zitat Mittal D, Kumar V, Saxena SC, Khandelwal N, Kalra N (2010) Enhancement of the ultrasound images by modified anisotropic diffusion method. Med BiolEngComput 48(12):1281–1291 Mittal D, Kumar V, Saxena SC, Khandelwal N, Kalra N (2010) Enhancement of the ultrasound images by modified anisotropic diffusion method. Med BiolEngComput 48(12):1281–1291
Zurück zum Zitat Mohan J, Krishnaveni V, Guo Y (2014) A survey on the magnetic resonance image denoising methods. Biomed Signal Process Control 9:56–69CrossRef Mohan J, Krishnaveni V, Guo Y (2014) A survey on the magnetic resonance image denoising methods. Biomed Signal Process Control 9:56–69CrossRef
Zurück zum Zitat Mredhula L and Dorairangasamy M (2013) An extensive review of significant researches on medical image denoising techniques. Int J Comput Appl 64(14):1–12 Mredhula L and Dorairangasamy M (2013) An extensive review of significant researches on medical image denoising techniques. Int J Comput Appl 64(14):1–12
Zurück zum Zitat Phophalia P, Mitra SK (2015) Rough set based bilateral filter design for denoising brain MR Images. Appl Soft Comput 33:1–14CrossRef Phophalia P, Mitra SK (2015) Rough set based bilateral filter design for denoising brain MR Images. Appl Soft Comput 33:1–14CrossRef
Zurück zum Zitat Sagheer SVM, George SN (2016) A novel approach for de-speckling of ultrasound images using bilateral filter. In: Proceedings of IEEE 3rd international conference recent advances in information technology (RAIT 2016), ISM Dhanbad, IEEE, 2016. pp 453–459 Sagheer SVM, George SN (2016) A novel approach for de-speckling of ultrasound images using bilateral filter. In: Proceedings of IEEE 3rd international conference recent advances in information technology (RAIT 2016), ISM Dhanbad, IEEE, 2016. pp 453–459
Zurück zum Zitat Shahdoosti HR, Rahemi Z (2019) Edge-preserving image denoising using a deep convolutional neural network. Signal Process 159:20–32CrossRef Shahdoosti HR, Rahemi Z (2019) Edge-preserving image denoising using a deep convolutional neural network. Signal Process 159:20–32CrossRef
Zurück zum Zitat Soumya V, Varghese A, Manesh T, Neetha K (2016) Denoising multi-coil magnetic resonance imaging using nonlocal means on extended LMMSE. In: Advances in signal processing and intelligent recognition systems. Springer, pp 187–198 Soumya V, Varghese A, Manesh T, Neetha K (2016) Denoising multi-coil magnetic resonance imaging using nonlocal means on extended LMMSE. In: Advances in signal processing and intelligent recognition systems. Springer, pp 187–198
Zurück zum Zitat Sudeep P, Palanisamy P, Kesavadas C, Rajan J (2015) Nonlocal linear minimum mean square error methods for denoising MRI. Biomed Signal Process Control 20:125–134CrossRef Sudeep P, Palanisamy P, Kesavadas C, Rajan J (2015) Nonlocal linear minimum mean square error methods for denoising MRI. Biomed Signal Process Control 20:125–134CrossRef
Zurück zum Zitat Tomasi C, Manduchi R (1998) Bilateral filtering for gray and color images. In: Proceedings of IEEE 6th international conference on computer vision. IEEE, Bombay, pp 839–846 Tomasi C, Manduchi R (1998) Bilateral filtering for gray and color images. In: Proceedings of IEEE 6th international conference on computer vision. IEEE, Bombay, pp 839–846
Zurück zum Zitat Uchikoshi K, Hasegawa M, Hirobayashi S (2019) Denoising of low dose CT images using mask non-harmonic analysis with edge-preservation segmentation and whitening filter. In: Multimodal biomedical imaging XIV, vol. 10871, international society for optics and photonics Uchikoshi K, Hasegawa M, Hirobayashi S (2019) Denoising of low dose CT images using mask non-harmonic analysis with edge-preservation segmentation and whitening filter. In: Multimodal biomedical imaging XIV, vol. 10871, international society for optics and photonics
Zurück zum Zitat Vaishali S, Kishan RK, Subba RGV (2015) A review on noise reduction methods for brain MRI images. International conference on signal processing and communication engineering systems Vaishali S, Kishan RK, Subba RGV (2015) A review on noise reduction methods for brain MRI images. International conference on signal processing and communication engineering systems
Zurück zum Zitat Wang Z, Bovik AC, Sheikh HR, Simoncelli EP (2004) Image quality assessment: from error visibility to structural similarity. IEEE Trans Image Process 13(4):600–612CrossRef Wang Z, Bovik AC, Sheikh HR, Simoncelli EP (2004) Image quality assessment: from error visibility to structural similarity. IEEE Trans Image Process 13(4):600–612CrossRef
Zurück zum Zitat Wang H, Zheng R, Dai F, Wang Q, Wang C (2019) High-field MR diffusion-weighted image denoising using a joint denoising convolutional neural network. J MagnReson Imaging 50:1937–1947CrossRef Wang H, Zheng R, Dai F, Wang Q, Wang C (2019) High-field MR diffusion-weighted image denoising using a joint denoising convolutional neural network. J MagnReson Imaging 50:1937–1947CrossRef
Zurück zum Zitat Wood J, Johnson K (1999) Wavelet packet denoising of magnetic resonance images: importance of Rician noise at low SNR. MagnReson Med 41(3):631–635CrossRef Wood J, Johnson K (1999) Wavelet packet denoising of magnetic resonance images: importance of Rician noise at low SNR. MagnReson Med 41(3):631–635CrossRef
Zurück zum Zitat You X, Cao N, Lu H, Mao M, Wang W (2019) Denoising of MR images with Rician noise using a wider neural network and noise range division. MagnReson Imaging 64:154–159CrossRef You X, Cao N, Lu H, Mao M, Wang W (2019) Denoising of MR images with Rician noise using a wider neural network and noise range division. MagnReson Imaging 64:154–159CrossRef
Zurück zum Zitat Zhang L, Zhang L, Mou X, Zhang D (2011) Fsim: A feature similarity index for image quality assessment. IEEE Trans Image Process 20(8):2378–2386MathSciNetCrossRef Zhang L, Zhang L, Mou X, Zhang D (2011) Fsim: A feature similarity index for image quality assessment. IEEE Trans Image Process 20(8):2378–2386MathSciNetCrossRef
Zurück zum Zitat Zhu H (2003) Medical image processing overview. University of Calgary, Calgary Zhu H (2003) Medical image processing overview. University of Calgary, Calgary
Metadaten
Titel
Performance investigations of filtering methods for T1 and T2 weighted infant brain MR images
verfasst von
Tushar H. Jaware
Vinod R. Patil
Ravindra D. Badgujar
Sumanta Bhattacharyya
Rajesh Dey
Rudra Sankar Dhar
Publikationsdatum
03.01.2021
Verlag
Springer Berlin Heidelberg
Erschienen in
Microsystem Technologies / Ausgabe 10/2021
Print ISSN: 0946-7076
Elektronische ISSN: 1432-1858
DOI
https://doi.org/10.1007/s00542-020-05144-6

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