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Erschienen in: Advances in Data Analysis and Classification 3/2018

13.10.2017 | Regular Article

Signal classification with a point process distance on the space of persistence diagrams

verfasst von: Andrew Marchese, Vasileios Maroulas

Erschienen in: Advances in Data Analysis and Classification | Ausgabe 3/2018

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Abstract

In this paper, we consider the problem of signal classification. First, the signal is translated into a persistence diagram through the use of delay-embedding and persistent homology. Endowing the data space of persistence diagrams with a metric from point processes, we show that it admits statistical structure in the form of Fréchet means and variances and a classification scheme is established. In contrast with the Wasserstein distance, this metric accounts for changes in small persistence and changes in cardinality. The classification results using this distance are benchmarked on both synthetic data and real acoustic signals and it is demonstrated that this classifier outperforms current signal classification techniques.

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Literatur
Zurück zum Zitat Adcock A, Carlsson E, Carlsson G (2016) The ring of algebraic functions on persistence bar codes. Homol Homotopy Appl 18(1):381–402CrossRef Adcock A, Carlsson E, Carlsson G (2016) The ring of algebraic functions on persistence bar codes. Homol Homotopy Appl 18(1):381–402CrossRef
Zurück zum Zitat Adler RJ, Bobrowski O, Weinberger S (2014) Crackle: the homology of noise. Discrete Comput Geom 52(4):680–704MathSciNetCrossRef Adler RJ, Bobrowski O, Weinberger S (2014) Crackle: the homology of noise. Discrete Comput Geom 52(4):680–704MathSciNetCrossRef
Zurück zum Zitat Azimi-Sadjadi MR, Yang Y, Srinivasan S (2007) Acoustic classification of battlefield transient events using wavelet subband features. In: Proceedings of SPIE defense and security symposium, p 6562 Azimi-Sadjadi MR, Yang Y, Srinivasan S (2007) Acoustic classification of battlefield transient events using wavelet subband features. In: Proceedings of SPIE defense and security symposium, p 6562
Zurück zum Zitat Bogert BP, Healy MJ, Tukey JW (1963) The quefrency alanysis of time series for echoes: cepstrum, pseudo-autocovariance, cross-cepstrum and saphe cracking. In: Proceedings of the symposium on time series analysis, chapter, vol 15, pp 209–243 Bogert BP, Healy MJ, Tukey JW (1963) The quefrency alanysis of time series for echoes: cepstrum, pseudo-autocovariance, cross-cepstrum and saphe cracking. In: Proceedings of the symposium on time series analysis, chapter, vol 15, pp 209–243
Zurück zum Zitat Bubenik P (2015) Statistical topological data analysis using persistence landscapes. J Mach Learn Res 16(1):77–102MathSciNetMATH Bubenik P (2015) Statistical topological data analysis using persistence landscapes. J Mach Learn Res 16(1):77–102MathSciNetMATH
Zurück zum Zitat Chazal F, Cohen-Steiner D, Glisse M, Guibas LJ, Oudot SY (2009) Proximity of persistence modules and their diagrams. In: Proceedings of the twenty-fifth annual symposium on Computational geometry. ACM, pp 237–246 Chazal F, Cohen-Steiner D, Glisse M, Guibas LJ, Oudot SY (2009) Proximity of persistence modules and their diagrams. In: Proceedings of the twenty-fifth annual symposium on Computational geometry. ACM, pp 237–246
Zurück zum Zitat Cohen-Steiner D, Edelsbrunner H, Harer J, Mileyko Y (2010) Lipschitz functions have \(L_p\)-stable persistence. Found Comput Math 10(2):127–139MathSciNetCrossRef Cohen-Steiner D, Edelsbrunner H, Harer J, Mileyko Y (2010) Lipschitz functions have \(L_p\)-stable persistence. Found Comput Math 10(2):127–139MathSciNetCrossRef
Zurück zum Zitat Dhanalakshmi P, Palanivel S, Ramalingam V (2009) Classification of audio signals using SVM and RBFNN. Expert Syst Appl 36(3):6069–6075CrossRef Dhanalakshmi P, Palanivel S, Ramalingam V (2009) Classification of audio signals using SVM and RBFNN. Expert Syst Appl 36(3):6069–6075CrossRef
Zurück zum Zitat Edelsbrunner H, Harer J (2010) Computational topology: an introduction. American Mathematical Society, ProvidenceMATH Edelsbrunner H, Harer J (2010) Computational topology: an introduction. American Mathematical Society, ProvidenceMATH
Zurück zum Zitat Emrani S, Gentimis T, Krim H (2015) Persistent homology of delay embeddings and its application to wheeze detection. IEEE Signal Process Lett 21(4):459–463CrossRef Emrani S, Gentimis T, Krim H (2015) Persistent homology of delay embeddings and its application to wheeze detection. IEEE Signal Process Lett 21(4):459–463CrossRef
Zurück zum Zitat Fasy BT, Kim J, Lecci F, Maria C, Rouvreau V (2015) The included GUDHI is authored by Clement Maria PbUBMK Dionysus by Dmitriy Morozov, Reininghaus J Tda: statistical tools for topological data analysis r package version 1.4.1. https://CRAN.R-project.org/package=TDA Fasy BT, Kim J, Lecci F, Maria C, Rouvreau V (2015) The included GUDHI is authored by Clement Maria PbUBMK Dionysus by Dmitriy Morozov, Reininghaus J Tda: statistical tools for topological data analysis r package version 1.4.1. https://​CRAN.​R-project.​org/​package=​TDA
Zurück zum Zitat Garrett D, Peterson DA, Anderson CW, Thaut MH (2003) Comparison of linear, nonlinear, and feature selection methods for eeg signal classification. IEEE Trans Neural Syst Rehabil Eng 11:141–166CrossRef Garrett D, Peterson DA, Anderson CW, Thaut MH (2003) Comparison of linear, nonlinear, and feature selection methods for eeg signal classification. IEEE Trans Neural Syst Rehabil Eng 11:141–166CrossRef
Zurück zum Zitat Hatcher A (2002) Algebraic topology. Cambridge University Press, CambridgeMATH Hatcher A (2002) Algebraic topology. Cambridge University Press, CambridgeMATH
Zurück zum Zitat Kerber M, Morozov D, Nigmetov A (2016) Geometry helps to compare persistence diagrams. In: Proceedings of the eighteenth workshop on algorithm engineering and experiments, pp 103–112 Kerber M, Morozov D, Nigmetov A (2016) Geometry helps to compare persistence diagrams. In: Proceedings of the eighteenth workshop on algorithm engineering and experiments, pp 103–112
Zurück zum Zitat Krim H, Gentimis T, Chintakunta H (2016) Discovering the whole by the coarse: a topological paradigm for data analysis. IEEE Signal Process Mag 33(2):95–104CrossRef Krim H, Gentimis T, Chintakunta H (2016) Discovering the whole by the coarse: a topological paradigm for data analysis. IEEE Signal Process Mag 33(2):95–104CrossRef
Zurück zum Zitat Law K, Stewart A, Zygalakis K (2015) Data assimilation: a mathematical introduction. Springer, BerlinCrossRef Law K, Stewart A, Zygalakis K (2015) Data assimilation: a mathematical introduction. Springer, BerlinCrossRef
Zurück zum Zitat Lum PY, Singh G, Lehman A, Ishkanov T, Vejdemo-Johansson M, Alagappan M, Carlsson J, Carlsson G (2013) Extracting insights from the shape of complex data using topology. Sci Rep 3(3):1236CrossRef Lum PY, Singh G, Lehman A, Ishkanov T, Vejdemo-Johansson M, Alagappan M, Carlsson J, Carlsson G (2013) Extracting insights from the shape of complex data using topology. Sci Rep 3(3):1236CrossRef
Zurück zum Zitat Maroulas V, Nebenführ A (2015) Tracking rapid intracellular movements: a Bayesian random set approach. Ann Appl Stat 9(2):926–949MathSciNetCrossRef Maroulas V, Nebenführ A (2015) Tracking rapid intracellular movements: a Bayesian random set approach. Ann Appl Stat 9(2):926–949MathSciNetCrossRef
Zurück zum Zitat Mileyko Y, Mukherjee S, Harer J (2011) Probability measures on the space of persistence diagrams. Inverse Problems 27(12):124007MathSciNetCrossRef Mileyko Y, Mukherjee S, Harer J (2011) Probability measures on the space of persistence diagrams. Inverse Problems 27(12):124007MathSciNetCrossRef
Zurück zum Zitat Nicolau M, Levine A, Carlsson G (2011) Topology based data analysis identifies a subgroup of breast cancers with a unique mutational profile and excellent survival. Proc Nat Acad Sci 108(17):7265–7270CrossRef Nicolau M, Levine A, Carlsson G (2011) Topology based data analysis identifies a subgroup of breast cancers with a unique mutational profile and excellent survival. Proc Nat Acad Sci 108(17):7265–7270CrossRef
Zurück zum Zitat Oppenheim AV, Schafer RW (2004) From frequency to quefrency: a history of the cepstrum. IEEE Signal Process Mag 21:95–106CrossRef Oppenheim AV, Schafer RW (2004) From frequency to quefrency: a history of the cepstrum. IEEE Signal Process Mag 21:95–106CrossRef
Zurück zum Zitat Reininghaus J, Huber S, Bauer U, Kwitt R (2015) A stable multi-scale kernel for topological machine learning. In: Proceedings of the IEEE conference on computer vision and pattern recognition, pp 4741–4748 Reininghaus J, Huber S, Bauer U, Kwitt R (2015) A stable multi-scale kernel for topological machine learning. In: Proceedings of the IEEE conference on computer vision and pattern recognition, pp 4741–4748
Zurück zum Zitat Robins V, Turner K (2016) Principal component analysis of persistent homology rank functions with case studies of spatial point patterns, sphere packing and colloids. Physica D 334:99–117MathSciNetCrossRef Robins V, Turner K (2016) Principal component analysis of persistent homology rank functions with case studies of spatial point patterns, sphere packing and colloids. Physica D 334:99–117MathSciNetCrossRef
Zurück zum Zitat Schuhmacher D, Vo B, Vo B (2008) A consistent metric for performance evaluation of multi-object filters. IEEE Trans Signal Process 56:3447–3457MathSciNetCrossRef Schuhmacher D, Vo B, Vo B (2008) A consistent metric for performance evaluation of multi-object filters. IEEE Trans Signal Process 56:3447–3457MathSciNetCrossRef
Zurück zum Zitat Seversky LM, Davis S, Berger M (2016) On time-series topological data analysis: new data and opportunities. In: The IEEE conference on computer vision and pattern recognition, pp 59–67 Seversky LM, Davis S, Berger M (2016) On time-series topological data analysis: new data and opportunities. In: The IEEE conference on computer vision and pattern recognition, pp 59–67
Zurück zum Zitat Sherwin J, Sajda P (2013) Musical experts recruit action-related neural structures in harmonic anomaly detection: evidence for embodied cognition in expertise. Brain Cogn 83:190–202CrossRef Sherwin J, Sajda P (2013) Musical experts recruit action-related neural structures in harmonic anomaly detection: evidence for embodied cognition in expertise. Brain Cogn 83:190–202CrossRef
Zurück zum Zitat Srinivas U, Nasrabadi NM, Monga V (2013) Graph-based multi-sensor fusion for acoustic signal classification. In: 2013 IEEE international conference on acoustics, speech and signal processing (ICASSP), pp 261–265 Srinivas U, Nasrabadi NM, Monga V (2013) Graph-based multi-sensor fusion for acoustic signal classification. In: 2013 IEEE international conference on acoustics, speech and signal processing (ICASSP), pp 261–265
Zurück zum Zitat Takens F (1980) Detecting strange attractors in turbulence. In: Dynamical systems and turbulence, Warwick 1980. Lecture notes in mathematics, vol 898, pp 366–381 Takens F (1980) Detecting strange attractors in turbulence. In: Dynamical systems and turbulence, Warwick 1980. Lecture notes in mathematics, vol 898, pp 366–381
Zurück zum Zitat Turner K, Mileyko Y, Mukherjee S, Harer J (2014) Fréchet means for distributions of persistence diagrams. Discrete Comput Geom 52(1):44–70MathSciNetCrossRef Turner K, Mileyko Y, Mukherjee S, Harer J (2014) Fréchet means for distributions of persistence diagrams. Discrete Comput Geom 52(1):44–70MathSciNetCrossRef
Zurück zum Zitat Venkataraman V, Ramamurthy KN, Turaga P (2016) Persistent homology of attractors for action recognition. In: 2016 IEEE international conference on image processing (ICIP), pp 4150–4154 Venkataraman V, Ramamurthy KN, Turaga P (2016) Persistent homology of attractors for action recognition. In: 2016 IEEE international conference on image processing (ICIP), pp 4150–4154
Zurück zum Zitat Xia K, Wei GW (2014) Persistent homology analysis of protein structure, flexibility, and folding. Int J Numer Methods Biomed Eng 30(8):814–844MathSciNetCrossRef Xia K, Wei GW (2014) Persistent homology analysis of protein structure, flexibility, and folding. Int J Numer Methods Biomed Eng 30(8):814–844MathSciNetCrossRef
Zurück zum Zitat Zhang H, Nasrabadi NM, Huang TS, Zhang Y (2011) Transient acoustic signal classification using joint sparse representation. In: 2011 IEEE international conference on acoustics, speech and signal processing (ICASSP), pp 2220–2223 Zhang H, Nasrabadi NM, Huang TS, Zhang Y (2011) Transient acoustic signal classification using joint sparse representation. In: 2011 IEEE international conference on acoustics, speech and signal processing (ICASSP), pp 2220–2223
Metadaten
Titel
Signal classification with a point process distance on the space of persistence diagrams
verfasst von
Andrew Marchese
Vasileios Maroulas
Publikationsdatum
13.10.2017
Verlag
Springer Berlin Heidelberg
Erschienen in
Advances in Data Analysis and Classification / Ausgabe 3/2018
Print ISSN: 1862-5347
Elektronische ISSN: 1862-5355
DOI
https://doi.org/10.1007/s11634-017-0294-x

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