Skip to main content
Erschienen in: Journal of Computational Neuroscience 2/2009

01.04.2009

MAP estimation algorithm for phase response curves based on analysis of the observation process

verfasst von: Keisuke Ota, Toshiaki Omori, Toru Aonishi

Erschienen in: Journal of Computational Neuroscience | Ausgabe 2/2009

Einloggen

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Many research groups have sought to measure phase response curves (PRCs) from real neurons. However, methods of estimating PRCs from noisy spike-response data have yet to be established. In this paper, we propose a Bayesian approach for estimating PRCs. First, we analytically obtain a likelihood function of the PRC from a detailed model of the observation process formulated as Langevin equations. Then we construct a maximum a posteriori (MAP) estimation algorithm based on the analytically obtained likelihood function. The MAP estimation algorithm derived here is equivalent to the spherical spin model. Moreover, we analytically calculate a marginal likelihood corresponding to the free energy of the spherical spin model, which enables us to estimate the hyper-parameters, i.e., the intensity of the Langevin force and the smoothness of the prior.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Anhänge
Nur mit Berechtigung zugänglich
Literatur
Zurück zum Zitat Aonishi T., & Ota, K. (2006). Statistical estimation algorithm for phase response curves. Journal of the Physical Society of Japan, 75, 114802.CrossRef Aonishi T., & Ota, K. (2006). Statistical estimation algorithm for phase response curves. Journal of the Physical Society of Japan, 75, 114802.CrossRef
Zurück zum Zitat Berlin, T. H., & Kac, M. (1952). The spherical model of a ferromagnet. Physical Review, 86, 821–835.CrossRef Berlin, T. H., & Kac, M. (1952). The spherical model of a ferromagnet. Physical Review, 86, 821–835.CrossRef
Zurück zum Zitat Brizzi, L., Meunier, C., Zytnicki, D., Donnet, M., Hansel, D., d’Incamps, B. L., et al. (2004). How shunting inhibition affects the discharge of lumbar motoneurones: a dynamic clamp study in anaesthetized cats. Journal of Physiology, 558, 671–683.PubMedCrossRef Brizzi, L., Meunier, C., Zytnicki, D., Donnet, M., Hansel, D., d’Incamps, B. L., et al. (2004). How shunting inhibition affects the discharge of lumbar motoneurones: a dynamic clamp study in anaesthetized cats. Journal of Physiology, 558, 671–683.PubMedCrossRef
Zurück zum Zitat Ermentrout, B. (1996). Type I membranes, phase resetting curves. Neural Computation, 8, 979–1001.PubMedCrossRef Ermentrout, B. (1996). Type I membranes, phase resetting curves. Neural Computation, 8, 979–1001.PubMedCrossRef
Zurück zum Zitat Ermentrout, B., & Saunders, D. (2006). Phase resetting and coupling of noisy neural oscillators. Journal of Computational Neuroscience, 20, 179–190.PubMedCrossRef Ermentrout, B., & Saunders, D. (2006). Phase resetting and coupling of noisy neural oscillators. Journal of Computational Neuroscience, 20, 179–190.PubMedCrossRef
Zurück zum Zitat Galan, R. F., Ermentrout, G. B., & Urban, N. N. (2005). Efficient estimation of phase-resetting curves in real neurons and its significance for neural-network modeling. Physical Review Letters, 94, 158101.PubMedCrossRef Galan, R. F., Ermentrout, G. B., & Urban, N. N. (2005). Efficient estimation of phase-resetting curves in real neurons and its significance for neural-network modeling. Physical Review Letters, 94, 158101.PubMedCrossRef
Zurück zum Zitat Izhikevich, E. M. (2004). Which model to use for cortical spiking neurons? IEEE Transactions on Neural Networks, 15, 1063–1070.PubMedCrossRef Izhikevich, E. M. (2004). Which model to use for cortical spiking neurons? IEEE Transactions on Neural Networks, 15, 1063–1070.PubMedCrossRef
Zurück zum Zitat Kuramoto, Y. (1984). Chemical oscillations, waves, and turbulence, series in synergetics. Berlin: Springer. Kuramoto, Y. (1984). Chemical oscillations, waves, and turbulence, series in synergetics. Berlin: Springer.
Zurück zum Zitat Lengyel, M., Kwan, J., Paulsen, O., & Dayan, P. (2005). Matching storage and recall: hippocampal spike timing-dependent plasticity and phase response curves. Nature Neuroscience, 8, 1677–1683.PubMedCrossRef Lengyel, M., Kwan, J., Paulsen, O., & Dayan, P. (2005). Matching storage and recall: hippocampal spike timing-dependent plasticity and phase response curves. Nature Neuroscience, 8, 1677–1683.PubMedCrossRef
Zurück zum Zitat Morris, C., & Lecar, H. (1981). Voltage oscillations in the barnacle giant muscle fiber. Biophysical Journal, 35, 193– 213.PubMedCrossRef Morris, C., & Lecar, H. (1981). Voltage oscillations in the barnacle giant muscle fiber. Biophysical Journal, 35, 193– 213.PubMedCrossRef
Zurück zum Zitat Netoff, T. I., Banks, M. I., Dorval, A. D., Acker, C. D., Haas, J. S., Kopell, N., et al. (2005). Synchronization in hybrid neuronal networks of the hippocampal formation. Journal of Neurophysiology, 93, 1197–1208.PubMedCrossRef Netoff, T. I., Banks, M. I., Dorval, A. D., Acker, C. D., Haas, J. S., Kopell, N., et al. (2005). Synchronization in hybrid neuronal networks of the hippocampal formation. Journal of Neurophysiology, 93, 1197–1208.PubMedCrossRef
Zurück zum Zitat Oizumi, M., Miyawaki, Y., & Okada, M. (2007). Higher order effects on rate reduction for networks of Hodgkin-Huxley neurons. Journal of the Physical Society of Japan, 76, 044803.CrossRef Oizumi, M., Miyawaki, Y., & Okada, M. (2007). Higher order effects on rate reduction for networks of Hodgkin-Huxley neurons. Journal of the Physical Society of Japan, 76, 044803.CrossRef
Zurück zum Zitat Oprisan, S. A., Prinz, A. A., & Canavier, C. C. (2004). Phase resetting and phase locking in hybrid circuits of one model and one biological neuron. Biophysical Journal, 87, 2283–2298.PubMedCrossRef Oprisan, S. A., Prinz, A. A., & Canavier, C. C. (2004). Phase resetting and phase locking in hybrid circuits of one model and one biological neuron. Biophysical Journal, 87, 2283–2298.PubMedCrossRef
Zurück zum Zitat Ota, K., Aonishi, T., Watanabe, S., Miyakawa, H., Omori, T., & Okada, M. (2007a). Perturbation response measurements in Hippocampal CA1 pyramidal neuron based on bayesian statistics. The 30th Annual Meeting of Japan Neuroscience Society (Neuro2007), P2-k18. Ota, K., Aonishi, T., Watanabe, S., Miyakawa, H., Omori, T., & Okada, M. (2007a). Perturbation response measurements in Hippocampal CA1 pyramidal neuron based on bayesian statistics. The 30th Annual Meeting of Japan Neuroscience Society (Neuro2007), P2-k18.
Zurück zum Zitat Ota, K., Aonishi, T., Watanabe, S., Miyakawa, H., Omori, T., & Okada, M. (2007b). Estimation of phase response curves in Hippocampal CA1 pyramidal neuron based on a Bayesian approach. The 37th annual meeting of the Society for Neuroscience (Neuroscience2007), 881.17. Ota, K., Aonishi, T., Watanabe, S., Miyakawa, H., Omori, T., & Okada, M. (2007b). Estimation of phase response curves in Hippocampal CA1 pyramidal neuron based on a Bayesian approach. The 37th annual meeting of the Society for Neuroscience (Neuroscience2007), 881.17.
Zurück zum Zitat Reyes, A. D., & Fetz, E. E. (1993). Effects of transient depolarizing potentials on the firing rate of cat neocortical neurons. Journal of Neurophysiology, 69, 1673–1683.PubMed Reyes, A. D., & Fetz, E. E. (1993). Effects of transient depolarizing potentials on the firing rate of cat neocortical neurons. Journal of Neurophysiology, 69, 1673–1683.PubMed
Zurück zum Zitat Rinzel, J. R., & Ermentrout, G. B. (1989). Analysis of neural excitability and oscillations. In C. Koch & I. Segev (Eds.), Methods in neural modeling (pp. 251–291). Cambridge: MIT. Rinzel, J. R., & Ermentrout, G. B. (1989). Analysis of neural excitability and oscillations. In C. Koch & I. Segev (Eds.), Methods in neural modeling (pp. 251–291). Cambridge: MIT.
Zurück zum Zitat Risken, H. (1989). The Fokker-Planck equation. Methods of solution and applications. Berlin: Springer. Risken, H. (1989). The Fokker-Planck equation. Methods of solution and applications. Berlin: Springer.
Zurück zum Zitat Shriki, O., Hansel, D., & Sompolinsky, H. (2003). Rate models for conductance-based cortical neuronal networks. Neural Computation, 15, 1809–1841.PubMedCrossRef Shriki, O., Hansel, D., & Sompolinsky, H. (2003). Rate models for conductance-based cortical neuronal networks. Neural Computation, 15, 1809–1841.PubMedCrossRef
Zurück zum Zitat Stoop, R., Schindler, K., & Bunimovich, L. A. (2000). Neocortical networks of pyramidal neurons: From local locking and chaos to macroscopic chaos and synchronization. Nonlinearity, 13, 1515–1529.CrossRef Stoop, R., Schindler, K., & Bunimovich, L. A. (2000). Neocortical networks of pyramidal neurons: From local locking and chaos to macroscopic chaos and synchronization. Nonlinearity, 13, 1515–1529.CrossRef
Zurück zum Zitat Tajima, S., Inoue, M., & Okada, M. (2008). Bayesian-optimal image reconstruction for translational-symmetric filters. Journal of the Physical Society of Japan, 77, 054803 Tajima, S., Inoue, M., & Okada, M. (2008). Bayesian-optimal image reconstruction for translational-symmetric filters. Journal of the Physical Society of Japan, 77, 054803
Zurück zum Zitat Tanaka, K. (2002). Statistical-mechanical approach to image processing. Journal of Physics A: Mathematical and General, 35, R81–R150.CrossRef Tanaka, K. (2002). Statistical-mechanical approach to image processing. Journal of Physics A: Mathematical and General, 35, R81–R150.CrossRef
Zurück zum Zitat Tateno, T., & Robinson, H. P. C. (2007a). Quantifying noise-induced stability of a cortical fast-spiking cell model with Kv3-channel-like current. BioSystems, 98, 110–116.CrossRef Tateno, T., & Robinson, H. P. C. (2007a). Quantifying noise-induced stability of a cortical fast-spiking cell model with Kv3-channel-like current. BioSystems, 98, 110–116.CrossRef
Zurück zum Zitat Tateno, T., & Robinson, H. P. C. (2007b). Phase resetting curves and oscillatory stability in interneurons of rat somatosensory cortex. Biophysical Journal, 92, 683–695.PubMedCrossRef Tateno, T., & Robinson, H. P. C. (2007b). Phase resetting curves and oscillatory stability in interneurons of rat somatosensory cortex. Biophysical Journal, 92, 683–695.PubMedCrossRef
Zurück zum Zitat Tsuzurugi, J., & Okada, M. (2002). Statistical mechanics of the Bayesian image restoration under spatially correlated noise. Physical Review E, 66, 066704.CrossRef Tsuzurugi, J., & Okada, M. (2002). Statistical mechanics of the Bayesian image restoration under spatially correlated noise. Physical Review E, 66, 066704.CrossRef
Zurück zum Zitat Winfree, A. T. (1967). Biological rhythms and the behavior of populations of coupled oscillators. Journal of Theoretical Biology, 28, 327–374CrossRef Winfree, A. T. (1967). Biological rhythms and the behavior of populations of coupled oscillators. Journal of Theoretical Biology, 28, 327–374CrossRef
Metadaten
Titel
MAP estimation algorithm for phase response curves based on analysis of the observation process
verfasst von
Keisuke Ota
Toshiaki Omori
Toru Aonishi
Publikationsdatum
01.04.2009
Verlag
Springer US
Erschienen in
Journal of Computational Neuroscience / Ausgabe 2/2009
Print ISSN: 0929-5313
Elektronische ISSN: 1573-6873
DOI
https://doi.org/10.1007/s10827-008-0104-8

Weitere Artikel der Ausgabe 2/2009

Journal of Computational Neuroscience 2/2009 Zur Ausgabe

Premium Partner